Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node G7 - C12 from junction 
BasepairNode | Deletion Probability [0.0000001233099223] | Pair Probability [[0.009047108,0.017980999,0.010334636,0.187602286,0.000000000],[0.016991075,0.008984252,0.219366759,0.012588934,0.000000000],[0.010296248,0.248730076,0.001955254,0.024017273,0.000000000],[0.186798784,0.012745957,0.022986810,0.009573550,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.005492996,0.988739357,0.005492996,0.000274650] | Right Letter Distribution [0.772727273,0.045454545,0.136363636,0.045454545,0.000000000] | Left Index [1] | Right Index [5] // Basepair G7 - C12 cWW 
HairpinNode  | Num Bases [3] | Left Index [2] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node A8:C10
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.772727273,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.045454545,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.045454545,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.136363636,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A8
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.318181818,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.045454545,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.045454545,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.590909091,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U9
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.007692308,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.761538462,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.007692308,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.223076923,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C10
