Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node U223 - A229 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.008686343,0.015043492,0.010150759,0.148076819,0.000000000],[0.079668596,0.012543602,0.195405288,0.011922454,0.000000000],[0.010248665,0.158198059,0.002094714,0.020629282,0.000000000],[0.177529753,0.011440134,0.128618680,0.009743362,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair U223 - A229 cWW 
BasepairNode | Deletion Probability [0.0000003315588406] | Pair Probability [[0.100363935,0.096106402,0.001186342,0.005620556,0.000000000],[0.109991044,0.102350464,0.001186342,0.001186342,0.000000000],[0.235374957,0.001186342,0.006030461,0.107664908,0.000000000],[0.125126743,0.104252476,0.001186342,0.001186342,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.188939376,0.808380908,0.002553497,0.000126218] | Right Letter Distribution [0.166666667,0.366666667,0.100000000,0.366666667,0.000000000] | Left Index [2] | Right Index [5] // Basepair G224 - A228 tSH 
HairpinNode  | Num Bases [2] | Left Index [3] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node A225:A226
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.583333333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.138888889,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.083333333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.194444444,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A225
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.737804878,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.067073171,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.189024390,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.006097561,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A226
