Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [10] // Initial node A30 - U40 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.008656101,0.019023238,0.009397950,0.234156706,0.000000000],[0.017761122,0.009039756,0.183496187,0.010211739,0.000000000],[0.009381147,0.193806354,0.001916039,0.037636721,0.000000000],[0.213861372,0.010402960,0.031027090,0.010225516,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [10] // Basepair A30 - U40 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.014436950,0.264791255,0.012889761,0.022512775,0.000000000],[0.015956256,0.017204790,0.019243046,0.014149980,0.000000000],[0.012620538,0.019602827,0.003979087,0.050833588,0.000000000],[0.019666410,0.015324417,0.016310825,0.480477495,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [9] // Basepair U31 - U39 cWW 
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.409090909,0.045454545,0.500000000,0.045454545,0.000000000] | Position [1] | Left Index [3] | Right Index [8] // Fixed node on left
InitialNode  | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [1.000000000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [8] // New Initial node after Fixed node
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.136363636,0.045454545,0.772727273,0.045454545,0.000000000] | Position [2] | Left Index [4] | Right Index [8] // Fixed node on right
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [7] // New Initial node after Fixed node
HairpinNode  | Num Bases [4] | Left Index [4] | Right Index [7] | Norm Constant [0.261529643730035] // Hairpin node A33:G37
Interaction  | Interacting Bases [1,4] | Pair Probability [[0.071703980,0.073208534,0.132869395,0.072674192,0.000000000],[0.099926616,0.073031471,0.003157041,0.066347042,0.000000000],[0.093619001,0.003097427,0.006610608,0.071752232,0.000000000],[0.067116411,0.034167437,0.059908779,0.070809834,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction A33 - G37 cSS 
Interaction  | Interacting Bases [2,4] | Pair Probability [[0.071212161,0.071893141,0.072699428,0.066762370,0.000000000],[0.099834189,0.072423742,0.003167868,0.055492012,0.000000000],[0.069797814,0.003219472,0.007219597,0.061775210,0.000000000],[0.091529489,0.065448457,0.119896235,0.067628816,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction U34 - G37 cSS 
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.500000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.045454545,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.409090909,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.045454545,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A35
Insertion    | Location [3] | Length Distribution [0.004882663,0.879489762,0.114742592,0.000854466,0.000030517] | Letter Distribution [0.041666667,0.041666667,0.125000000,0.791666667,0.000000000]// Insertion in Hairpin after nucleotide 6, position 3
