Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node G2794 - C2802 from junction 
BasepairNode | Deletion Probability [0.0000001231336240] | Pair Probability [[0.009294090,0.019785678,0.010478215,0.203605867,0.000000000],[0.016519773,0.009190356,0.193944205,0.012313588,0.000000000],[0.010376412,0.246249955,0.002002721,0.029996924,0.000000000],[0.190808126,0.012824690,0.022503671,0.010105729,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.008193363,0.983203605,0.008193363,0.000409668] | Left Letter Distribution [0.562500000,0.062500000,0.062500000,0.312500000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair G2794 - C2802 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.268206884,0.015551543,0.021028290,0.007554325,0.000000000],[0.194638134,0.012684090,0.002116031,0.007968863,0.000000000],[0.205690910,0.002116031,0.026951427,0.006306246,0.000000000],[0.198820544,0.012872646,0.010065478,0.007428559,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair A2796 - A2801 cSW 
HairpinNode  | Num Bases [4] | Left Index [3] | Right Index [6] | Norm Constant [1.000000000000000] // Hairpin node G2797:C2800
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.011363636,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.170454545,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.647727273,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.170454545,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G2797
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.812500000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.062500000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.062500000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.062500000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A2798
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.187500000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.562500000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.062500000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.187500000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C2799
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.062500000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.312500000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.562500000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.062500000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C2800
