Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node G88 - C95 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.003421372,0.049878455,0.003896030,0.070763821,0.000000000],[0.006009733,0.023484994,0.071363436,0.004669298,0.000000000],[0.003852762,0.636871337,0.000734378,0.009407902,0.000000000],[0.069858180,0.033923966,0.008246450,0.003617885,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair G88 - C95 cWW 
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.031250000,0.218750000,0.031250000,0.718750000,0.000000000] | Position [2] | Left Index [2] | Right Index [7] // Fixed node on right
InitialNode  | Left Length Distribution [1.000000000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [6] // New Initial node after Fixed node
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.218750000,0.156250000,0.593750000,0.031250000,0.000000000] | Position [2] | Left Index [2] | Right Index [6] // Fixed node on right
InitialNode  | Left Length Distribution [1.000000000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // New Initial node after Fixed node
BasepairNode | Deletion Probability [0.0000011805868568] | Pair Probability [[0.016670989,0.003689317,0.017315551,0.003689317,0.000000000],[0.037100939,0.297288410,0.003689317,0.003689317,0.000000000],[0.003689317,0.008843535,0.028056941,0.016408810,0.000000000],[0.498434800,0.003689317,0.021404972,0.036339155,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.428133005,0.569660385,0.002105156,0.000101453] | Left Letter Distribution [0.150000000,0.050000000,0.550000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair U89 - A92 tWH 
HairpinNode  | Num Bases [2] | Left Index [3] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node A90:G91
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.906250000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.031250000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.031250000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.031250000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A90
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.093750000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.156250000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.343750000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.406250000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G91
