Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node U779 - G785 from junction 
BasepairNode | Deletion Probability [0.0000016853335170] | Pair Probability [[0.009725060,0.015456119,0.011612777,0.139481247,0.000000000],[0.110048040,0.015196140,0.185380856,0.013989850,0.000000000],[0.011792020,0.142181183,0.002401060,0.019759909,0.000000000],[0.156825235,0.013232153,0.142088180,0.010830171,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.497737557,0.497737557,0.004319210,0.000205677] | Right Letter Distribution [0.100000000,0.300000000,0.500000000,0.100000000,0.000000000] | Left Index [1] | Right Index [5] // Basepair U779 - G785 cWW 
BasepairNode | Deletion Probability [0.0000001231336240] | Pair Probability [[0.155616705,0.154871150,0.001934200,0.009352669,0.000000000],[0.180998274,0.008528493,0.029866127,0.007732903,0.000000000],[0.240589762,0.001934200,0.001934200,0.006342891,0.000000000],[0.167385278,0.008405952,0.015219036,0.009288161,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.008193363,0.983203605,0.008193363,0.000409668] | Left Letter Distribution [0.437500000,0.062500000,0.062500000,0.437500000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [4] // Basepair G780 - A783 tSW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node A782:A782
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.437500000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.062500000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.437500000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.062500000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A782
