Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node G12 - C23 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.009280432,0.020368229,0.010312873,0.215702181,0.000000000],[0.016772457,0.009285906,0.193782875,0.011767824,0.000000000],[0.010233627,0.226772067,0.002010885,0.036277626,0.000000000],[0.192008674,0.012321377,0.022616385,0.010486579,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair G12 - C23 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.014050246,0.257698632,0.012544499,0.021909755,0.000000000],[0.015528856,0.016743948,0.018727607,0.013770962,0.000000000],[0.012282488,0.019077752,0.003872504,0.128043403,0.000000000],[0.019139631,0.014913942,0.015873928,0.415821848,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair U13 - U22 cWW 
BasepairNode | Deletion Probability [0.0000000000030757] | Pair Probability [[0.228838658,0.184211091,0.194671754,0.266740872,0.000000000],[0.014718424,0.012004586,0.002002672,0.012183040,0.000000000],[0.019901775,0.002002672,0.025507600,0.009526256,0.000000000],[0.007149629,0.007541959,0.005968411,0.007030600,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.000000000,0.000000000,0.009799118,0.979911808,0.009799118,0.000489956] | Right Letter Distribution [0.029411765,0.147058824,0.617647059,0.205882353,0.000000000] | Left Index [3] | Right Index [6] // Basepair A14 - A21 cWS 
HairpinNode  | Num Bases [2] | Left Index [4] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node G15:U16
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.071428571,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.071428571,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.785714286,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.071428571,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G15
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.071428571,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.071428571,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.357142857,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.500000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U16
