Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node G46 - C53 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.008530388,0.017359359,0.009671116,0.186678966,0.000000000],[0.016046005,0.008514709,0.206336649,0.011566840,0.000000000],[0.009620172,0.269648411,0.001847676,0.024498429,0.000000000],[0.185613341,0.011775168,0.023133583,0.009159189,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Basepair G46 - C53 cWW 
HairpinNode  | Num Bases [5] | Left Index [2] | Right Index [6] | Norm Constant [1.000000000000000] // Hairpin node U47:A52
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.029411765,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.382352941,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.029411765,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.558823529,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U47
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.029411765,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.088235294,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.264705882,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.617647059,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U49
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.029411765,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.617647059,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.029411765,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.323529412,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C50
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.205882353,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.147058824,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.147058824,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.500000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U51
Interaction  | Interacting Bases [5,5] | Pair Probability [[0.676470588,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.205882353,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.029411765,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.088235294,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A52
Insertion    | Location [1] | Length Distribution [0.532198331,0.466088110,0.001636173,0.000077387] | Letter Distribution [0.055555556,0.055555556,0.055555556,0.833333333,0.000000000]// Insertion in Hairpin after nucleotide 2, position 1
Insertion    | Location [4] | Length Distribution [0.930093541,0.069519013,0.000376377,0.000011070] | Letter Distribution [0.166666667,0.166666667,0.500000000,0.166666667,0.000000000]// Insertion in Hairpin after nucleotide 5, position 4
