Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node U3 - A8 from junction 
BasepairNode | Deletion Probability [0.0000097596267952] | Pair Probability [[0.008886126,0.017248940,0.009893342,0.190110480,0.000000000],[0.020135330,0.009395594,0.201875378,0.011427567,0.000000000],[0.009905745,0.200257925,0.001981628,0.022841193,0.000000000],[0.233045106,0.010997521,0.042245054,0.009753071,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.826344012,0.171868555,0.001718686,0.000068747] | Right Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair U3 - A8 cWW 
BasepairNode | Deletion Probability [0.0000097596267952] | Pair Probability [[0.296711805,0.052159493,0.019116627,0.006867568,0.000000000],[0.176943758,0.011530991,0.001923665,0.007244421,0.000000000],[0.186991736,0.001923665,0.024501297,0.005732951,0.000000000],[0.180745949,0.011702405,0.009150435,0.006753235,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.826344012,0.171868555,0.001718686,0.000068747] | Left Letter Distribution [0.500000000,0.166666667,0.166666667,0.166666667,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair A4 - A7 cSW 
HairpinNode  | Num Bases [2] | Left Index [3] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node G5:U6
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.170454545,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.011363636,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.806818182,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.011363636,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G5
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.062500000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.187500000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.187500000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.562500000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U6
