Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [11] // Initial node C11 - G22 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.008814842,0.015337879,0.010236108,0.168782487,0.000000000],[0.039887656,0.010229656,0.275885847,0.012729598,0.000000000],[0.010362616,0.172347010,0.001995485,0.020703592,0.000000000],[0.174646453,0.012206329,0.056369083,0.009465356,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [11] // Basepair C11 - G22 cWW 
HairpinNode  | Num Bases [9] | Left Index [2] | Right Index [10] | Norm Constant [0.999999999999999] // Hairpin node A12:C21
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.892857143,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.035714286,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.035714286,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.035714286,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A12
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.035714286,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.035714286,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.035714286,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.892857143,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U13
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.035714286,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.035714286,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.035714286,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.892857143,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U14
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.035714286,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.035714286,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.892857143,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.035714286,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G15
Interaction  | Interacting Bases [5,5] | Pair Probability [[0.821428571,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.107142857,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.035714286,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.035714286,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A17
Interaction  | Interacting Bases [6,6] | Pair Probability [[0.107142857,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.750000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.107142857,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.035714286,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C18
Interaction  | Interacting Bases [7,7] | Pair Probability [[0.107142857,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.107142857,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.035714286,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.750000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U19
Interaction  | Interacting Bases [8,8] | Pair Probability [[0.035714286,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.821428571,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.035714286,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.107142857,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C20
Interaction  | Interacting Bases [9,9] | Pair Probability [[0.035714286,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.892857143,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.035714286,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.035714286,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C21
Insertion    | Location [4] | Length Distribution [0.086444414,0.909560546,0.003805621,0.000189420] | Letter Distribution [0.038461538,0.884615385,0.038461538,0.038461538,0.000000000]// Insertion in Hairpin after nucleotide 5, position 4
Insertion    | Location [6] | Length Distribution [0.829821046,0.169280730,0.000863677,0.000034547] | Letter Distribution [0.125000000,0.375000000,0.125000000,0.375000000,0.000000000]// Insertion in Hairpin after nucleotide 7, position 6
