Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node C789 - G798 from junction 
HairpinNode  | Num Bases [7] | Left Index [1] | Right Index [7] | Norm Constant [0.249973259348243] // Hairpin node C789:G798
Interaction  | Interacting Bases [2,6] | Pair Probability [[0.161671308,0.158976612,0.001984076,0.009657096,0.000000000],[0.209780801,0.008874447,0.001984076,0.007985973,0.000000000],[0.221911551,0.001984076,0.001984076,0.006483107,0.000000000],[0.173619805,0.008756591,0.014756162,0.009590242,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G790 - A795 tSW 
Interaction  | Interacting Bases [1,7] | Pair Probability [[0.009057963,0.018354800,0.010060520,0.203200943,0.000000000],[0.019230394,0.009423090,0.203835059,0.011564523,0.000000000],[0.010064286,0.203344265,0.002002830,0.029053534,0.000000000],[0.214301711,0.011434067,0.034939147,0.010132867,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction C789 - G798 cWW 
Interaction  | Interacting Bases [5,7] | Pair Probability [[0.104247946,0.091635700,0.103157231,0.092253245,0.000000000],[0.163558958,0.163026387,0.002395318,0.163725761,0.000000000],[0.023016496,0.002395318,0.027010747,0.010380352,0.000000000],[0.012877755,0.018619515,0.009694589,0.012004682,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction A794 - G798 cWS 
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.214285714,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.357142857,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.214285714,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.214285714,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U791
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.203703704,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.018518519,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.759259259,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.018518519,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G793
Insertion    | Location [3] | Length Distribution [0.009799118,0.979911808,0.009799118,0.000489956] | Letter Distribution [0.071428571,0.071428571,0.071428571,0.785714286,0.000000000]// Insertion in Hairpin after nucleotide 3, position 3
Insertion    | Location [6] | Length Distribution [0.000000000,0.009799118,0.979911808,0.009799118,0.000489956] | Letter Distribution [0.708333333,0.125000000,0.041666667,0.125000000,0.000000000]// Insertion in Hairpin after nucleotide 6, position 6
