Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node U382 - A387 from junction 
BasepairNode | Deletion Probability [0.0000203489611040] | Pair Probability [[0.002652127,0.005174646,0.003047891,0.101844099,0.000000000],[0.011541026,0.003050127,0.478785299,0.003690212,0.000000000],[0.003066691,0.210002433,0.000597878,0.009961346,0.000000000],[0.086997938,0.003615240,0.073063654,0.002909393,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.963184982,0.036799154,0.000015528,0.000000335] | Right Letter Distribution [0.041666667,0.291666667,0.375000000,0.291666667,0.000000000] | Left Index [1] | Right Index [6] // Basepair U382 - A387 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.018948317,0.021176239,0.000172359,0.001878303,0.000000000],[0.015372119,0.015928556,0.000162607,0.002946527,0.000000000],[0.736082817,0.003790319,0.042599329,0.077899902,0.000000000],[0.022275347,0.032090283,0.005730448,0.002946527,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair G383 - A386 tSH 
HairpinNode  | Num Bases [2] | Left Index [3] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node A384:A385
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.678181818,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.136363636,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.052727273,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.132727273,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A384
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.764813460,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.018653987,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.212509144,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.004023409,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A385
Insertion    | Location [1] | Length Distribution [0.988820854,0.011167978,0.000011067,0.000000101] | Letter Distribution [0.100000000,0.100000000,0.100000000,0.700000000,0.000000000]// Insertion in Hairpin after nucleotide 3, position 1
