Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node U1777 - A1787 from junction 
BasepairNode | Deletion Probability [0.0000001230289089] | Pair Probability [[0.008776211,0.017043482,0.009626941,0.190711986,0.000000000],[0.021414125,0.009550770,0.191353636,0.010729332,0.000000000],[0.009645717,0.188904676,0.001985843,0.022389043,0.000000000],[0.246203326,0.010078147,0.051771850,0.009814914,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.009799118,0.979911808,0.009799118,0.000489956] | Right Letter Distribution [0.785714286,0.071428571,0.071428571,0.071428571,0.000000000] | Left Index [1] | Right Index [7] // Basepair U1777 - A1787 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.020410803,0.003943665,0.035057120,0.003943665,0.000000000],[0.109609892,0.292216935,0.003943665,0.003943665,0.000000000],[0.003943665,0.009440547,0.029747413,0.021082024,0.000000000],[0.344212553,0.003943665,0.020785752,0.093774971,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [6] // Basepair U1778 - A1785 tWH 
BasepairNode | Deletion Probability [0.0000000000030757] | Pair Probability [[0.031622574,0.000999732,0.004692174,0.000999732,0.000000000],[0.070375380,0.080559320,0.000999732,0.000999732,0.000000000],[0.006998126,0.002396424,0.007602880,0.004446465,0.000000000],[0.770660471,0.000999732,0.005800327,0.009847197,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.000000000,0.000000000,0.009799118,0.979911808,0.009799118,0.000489956] | Left Letter Distribution [0.382352941,0.205882353,0.088235294,0.323529412,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [5] // Basepair U1779 - A1784 tWH 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node A1783:A1783
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.759259259,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.018518519,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.018518519,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.203703704,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A1783
