Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node U44 - A51 from junction 
BasepairNode | Deletion Probability [0.0000022482900247] | Pair Probability [[0.008459146,0.015372483,0.009888841,0.142484388,0.000000000],[0.063943524,0.011289994,0.187932192,0.011771422,0.000000000],[0.009916647,0.229856576,0.001980943,0.019835530,0.000000000],[0.158930846,0.011619557,0.107462627,0.009255284,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.648355755,0.250996512,0.100355007,0.000280269,0.000012456] | Left Letter Distribution [0.227272727,0.136363636,0.318181818,0.318181818,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair U44 - A51 cWW 
HairpinNode  | Num Bases [6] | Left Index [2] | Right Index [7] | Norm Constant [1.000000000000000] // Hairpin node U45:G50
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.204545455,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.159090909,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.340909091,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.295454545,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U45
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.295454545,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.386363636,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.022727273,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.295454545,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A46
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.477272727,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.204545455,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.159090909,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.159090909,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C47
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.340909091,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.159090909,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.250000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.250000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U48
Interaction  | Interacting Bases [5,5] | Pair Probability [[0.159090909,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.250000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.340909091,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.250000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U49
Interaction  | Interacting Bases [6,6] | Pair Probability [[0.204545455,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.113636364,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.568181818,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.113636364,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G50
