Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node A31 - U39 from junction 
BasepairNode | Deletion Probability [0.0000239574126029] | Pair Probability [[0.009166602,0.020383573,0.009980938,0.227730182,0.000000000],[0.017857579,0.009428504,0.203678568,0.011001082,0.000000000],[0.009996931,0.194467451,0.002013816,0.044896561,0.000000000],[0.193563959,0.011369935,0.023491652,0.010972668,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.995990040,0.003999960,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair A31 - U39 cWW 
BasepairNode | Deletion Probability [0.0000000000429844] | Pair Probability [[0.014642936,0.268569294,0.013073672,0.022833987,0.000000000],[0.016183920,0.017450268,0.019517606,0.014351871,0.000000000],[0.053433362,0.019882520,0.004035860,0.051558882,0.000000000],[0.019947010,0.015543066,0.016543547,0.432432199,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.003046923,0.243753809,0.012187690,0.731413772,0.009140768,0.000457038] | Right Letter Distribution [0.291666667,0.541666667,0.125000000,0.041666667,0.000000000] | Left Index [2] | Right Index [5] // Basepair U32 - U38 cWW 
HairpinNode  | Num Bases [2] | Left Index [3] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node U33:C34
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.083333333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.083333333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.083333333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.750000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U33
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.083333333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.583333333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.083333333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.250000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C34
