Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [9] // Initial node G31 - C39 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.007321517,0.015593468,0.008115979,0.273288254,0.000000000],[0.020966448,0.007871885,0.195605409,0.009166410,0.000000000],[0.008114035,0.204048003,0.001623127,0.029951416,0.000000000],[0.165611877,0.009372059,0.034868952,0.008481159,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [9] // Basepair G31 - C39 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.020608131,0.023150601,0.005028382,0.005028382,0.000000000],[0.703315889,0.058889179,0.005028382,0.005028382,0.000000000],[0.005028382,0.005028382,0.043715289,0.032191143,0.000000000],[0.061566671,0.016336040,0.005028382,0.005028382,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [8] // Basepair C32 - A38 bif 
HairpinNode  | Num Bases [5] | Left Index [3] | Right Index [7] | Norm Constant [0.999999999999999] // Hairpin node U33:A37
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.033185841,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.033185841,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.002212389,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.931415929,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U33
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.044117647,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.426470588,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.426470588,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.102941176,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C34
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.514705882,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.250000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.132352941,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.102941176,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A35
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.485294118,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.191176471,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.014705882,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.308823529,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U36
Interaction  | Interacting Bases [5,5] | Pair Probability [[0.661764706,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.102941176,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.191176471,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.044117647,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A37
Insertion    | Location [1] | Length Distribution [0.967164848,0.032708413,0.000124302,0.000002437] | Letter Distribution [0.500000000,0.166666667,0.166666667,0.166666667,0.000000000]// Insertion in Hairpin after nucleotide 3, position 1
