Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node C246 - G252 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.009323756,0.015877713,0.010902482,0.167504797,0.000000000],[0.057767753,0.011742545,0.232594255,0.013451740,0.000000000],[0.011045651,0.170984366,0.002157753,0.021172046,0.000000000],[0.176272283,0.012855711,0.076243940,0.010103208,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Basepair C246 - G252 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.068633616,0.049385507,0.000771139,0.003732319,0.000000000],[0.078968013,0.063136280,0.000771139,0.000771139,0.000000000],[0.333146473,0.002914223,0.014957341,0.230264202,0.000000000],[0.081727946,0.069278386,0.000771139,0.000771139,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [6] // Basepair G247 - A251 tSH 
HairpinNode  | Num Bases [3] | Left Index [3] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node G248:G250
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.055555556,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.055555556,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.722222222,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.166666667,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G248
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.001449275,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.995652174,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.001449275,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.001449275,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C249
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.166666667,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.055555556,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.722222222,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.055555556,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G250
