Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node G23 - C29 from junction 
BasepairNode | Deletion Probability [0.0000003483978778] | Pair Probability [[0.009417290,0.019076634,0.010743958,0.195076917,0.000000000],[0.017226610,0.009304766,0.207905455,0.013002891,0.000000000],[0.010672216,0.239916288,0.002029679,0.025359511,0.000000000],[0.193575287,0.013296343,0.023433726,0.009962428,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.204221895,0.787432499,0.007952872,0.000392734] | Left Letter Distribution [0.750000000,0.083333333,0.083333333,0.083333333,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair G23 - C29 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.203107741,0.046494307,0.003483177,0.010868727,0.000000000],[0.145237611,0.015974221,0.033903959,0.009508809,0.000000000],[0.140766888,0.186788362,0.003483177,0.007980206,0.000000000],[0.155220156,0.012097436,0.013661963,0.011423258,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair A25 - A28 tSW 
HairpinNode  | Num Bases [2] | Left Index [3] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node A26:C27
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.642857143,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.214285714,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.071428571,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.071428571,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A26
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.202702703,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.770270270,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.013513514,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.013513514,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C27
