Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [9] // Initial node A59 - U67 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.008693563,0.019121607,0.009650564,0.229048924,0.000000000],[0.015730564,0.008706074,0.181536954,0.010987935,0.000000000],[0.009577847,0.248127239,0.001884474,0.034411727,0.000000000],[0.179966837,0.011509408,0.021196057,0.009850227,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [9] // Basepair A59 - U67 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.010080286,0.013199009,0.012833387,0.027809212,0.000000000],[0.439209153,0.036996213,0.031439147,0.014330603,0.000000000],[0.013141970,0.026516183,0.003240225,0.013705140,0.000000000],[0.034940627,0.013059696,0.296505749,0.012993400,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [8] // Basepair C60 - A66 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.173725874,0.016835553,0.016595177,0.006850719,0.000000000],[0.258053928,0.014812852,0.001884678,0.007301182,0.000000000],[0.173299871,0.001884678,0.057094116,0.005818232,0.000000000],[0.236187312,0.014491142,0.008431629,0.006733057,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [7] // Basepair C61 - A65 cSW 
HairpinNode  | Num Bases [3] | Left Index [4] | Right Index [6] | Norm Constant [1.000000000000000] // Hairpin node G62:A64
Interaction  | Interacting Bases [1,2] | Pair Probability [[0.068584304,0.069343764,0.003849349,0.069093448,0.000000000],[0.060530190,0.077944113,0.000850733,0.088124335,0.000000000],[0.065142913,0.000850733,0.072248020,0.118559606,0.000000000],[0.069829572,0.106326511,0.000850733,0.127871676,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G62 - U63 cSH 
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.982558140,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.005813953,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.005813953,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.005813953,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A64
