Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node G77 - C85 from junction 
BasepairNode | Deletion Probability [0.0000004444241139] | Pair Probability [[0.011043683,0.087705864,0.011663765,0.168825951,0.000000000],[0.015941238,0.010156843,0.158274510,0.013303388,0.000000000],[0.011498012,0.192719706,0.002332326,0.108853206,0.000000000],[0.155160397,0.013999784,0.020787547,0.017733780,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.253667482,0.736552567,0.009321516,0.000458435] | Right Letter Distribution [0.100000000,0.100000000,0.500000000,0.300000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair G77 - C85 cWW 
BasepairNode | Deletion Probability [0.0000239574126029] | Pair Probability [[0.341615830,0.003223851,0.284401550,0.003223851,0.000000000],[0.027594241,0.013680883,0.003223851,0.003223851,0.000000000],[0.003223851,0.061307595,0.118500437,0.034507085,0.000000000],[0.014567679,0.003223851,0.015451914,0.069029682,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.995990040,0.003999960,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair A78 - A83 tWH 
BasepairNode | Deletion Probability [0.0000239574126029] | Pair Probability [[0.016740489,0.003704697,0.017387738,0.003704697,0.000000000],[0.037255609,0.298527778,0.003704697,0.003704697,0.000000000],[0.003704697,0.008880403,0.028173908,0.016477216,0.000000000],[0.389700464,0.057026375,0.074815886,0.036490649,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.995990040,0.003999960,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // Basepair U79 - A82 tWH 
HairpinNode  | Num Bases [2] | Left Index [4] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node A80:A81
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.583333333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.083333333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.083333333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.250000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A80
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.250000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.083333333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.416666667,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.250000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A81
