Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node C28 - G33 from junction 
BasepairNode | Deletion Probability [0.0000200614746445] | Pair Probability [[0.006400631,0.011725369,0.007334658,0.146791473,0.000000000],[0.013412271,0.006507835,0.448831520,0.009146058,0.000000000],[0.007404072,0.156071103,0.001401062,0.016642554,0.000000000],[0.134888076,0.008877364,0.017739748,0.006826206,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.960570113,0.039344916,0.000083123,0.000001847] | Right Letter Distribution [0.375000000,0.125000000,0.125000000,0.375000000,0.000000000] | Left Index [1] | Right Index [5] // Basepair C28 - G33 cWW 
BasepairNode | Deletion Probability [0.0000001236064579] | Pair Probability [[0.021859428,0.020602182,0.002599796,0.114316387,0.000000000],[0.022423262,0.011513474,0.028467930,0.017499452,0.000000000],[0.046688647,0.004562412,0.002599796,0.012071054,0.000000000],[0.025636978,0.012048993,0.554616470,0.102493738,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.000959647,0.998032724,0.000959647,0.000047982] | Left Letter Distribution [0.138888889,0.083333333,0.009259259,0.768518519,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [4] // Basepair U29 - G32 tSW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node C31:C31
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.046296296,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.861111111,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.009259259,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.083333333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C31
