Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node A69 - U76 from junction 
BasepairNode | Deletion Probability [0.0000239574126029] | Pair Probability [[0.010774303,0.087781157,0.011060585,0.188806380,0.000000000],[0.016926973,0.010215360,0.165003366,0.011993158,0.000000000],[0.011006102,0.156433179,0.002308841,0.121014314,0.000000000],[0.154469200,0.012523924,0.021379402,0.018303756,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.995990040,0.003999960,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Basepair A69 - U76 cWW 
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.416666667,0.083333333,0.416666667,0.083333333,0.000000000] | Position [1] | Left Index [2] | Right Index [6] // Fixed node on left
InitialNode  | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [1.000000000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // New Initial node after Fixed node
BasepairNode | Deletion Probability [0.0000001215781528] | Pair Probability [[0.073566642,0.073006261,0.070917251,0.073552522,0.000000000],[0.098049710,0.074615088,0.003437300,0.066716418,0.000000000],[0.098025574,0.003379657,0.007155805,0.078088272,0.000000000],[0.072563539,0.069769429,0.068875151,0.068281382,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.012187690,0.975015235,0.012187690,0.000609385] | Right Letter Distribution [0.083333333,0.583333333,0.083333333,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // Basepair G71 - A75 cSS 
HairpinNode  | Num Bases [2] | Left Index [4] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node G72:U73
Interaction  | Interacting Bases [1,2] | Pair Probability [[0.044818056,0.046685522,0.006141431,0.110298723,0.000000000],[0.036275831,0.103785704,0.001320968,0.129898382,0.000000000],[0.125066668,0.001320968,0.051530555,0.130731861,0.000000000],[0.046579044,0.049284262,0.001320968,0.114941055,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin Interaction G72 - U73 cSH 
