Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node G1361 - C1367 from junction 
BasepairNode | Deletion Probability [0.0000000035949991] | Pair Probability [[0.008815443,0.018353160,0.009996502,0.192294218,0.000000000],[0.015844115,0.008708069,0.193606842,0.011914381,0.000000000],[0.009910961,0.278185774,0.001899121,0.026132318,0.000000000],[0.180991745,0.012309084,0.021583371,0.009454896,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.333724057,0.663311039,0.002827001,0.000137903] | Left Letter Distribution [0.050000000,0.450000000,0.350000000,0.150000000,0.000000000] | Right Length Distribution [0.004131378,0.991530675,0.004131378,0.000206569] | Right Letter Distribution [0.321428571,0.035714286,0.035714286,0.607142857,0.000000000] | Left Index [1] | Right Index [5] // Basepair G1361 - C1367 cWW 
HairpinNode  | Num Bases [3] | Left Index [2] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node U1363:G1365
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.464285714,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.107142857,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.035714286,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.392857143,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U1363
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.392857143,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.464285714,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.107142857,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.035714286,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C1364
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.321428571,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.035714286,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.607142857,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.035714286,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G1365
