Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [10] // Initial node G786 - C796 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.008819762,0.018124088,0.009959712,0.202847942,0.000000000],[0.016578175,0.008818938,0.213602497,0.011845166,0.000000000],[0.009925645,0.242528718,0.001911957,0.028187187,0.000000000],[0.182832453,0.012083152,0.022313377,0.009621229,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [10] // Basepair G786 - C796 cWW 
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.346153846,0.038461538,0.500000000,0.115384615,0.000000000] | Position [1] | Left Index [2] | Right Index [9] // Fixed node on left
InitialNode  | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [1.000000000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [9] // New Initial node after Fixed node
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.115384615,0.500000000,0.038461538,0.346153846,0.000000000] | Position [2] | Left Index [3] | Right Index [9] // Fixed node on right
InitialNode  | Left Length Distribution [1.000000000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [8] // New Initial node after Fixed node
BasepairNode | Deletion Probability [0.0000021781539185] | Pair Probability [[0.100852388,0.100252221,0.001170348,0.005618559,0.000000000],[0.101441703,0.101511325,0.001170348,0.001170348,0.000000000],[0.170762009,0.022353694,0.006364883,0.098409479,0.000000000],[0.160531682,0.104866972,0.001170348,0.022353694,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.543801687,0.453920502,0.002175207,0.000102604] | Right Letter Distribution [0.071428571,0.071428571,0.214285714,0.642857143,0.000000000] | Left Index [3] | Right Index [8] // Basepair U788 - A794 tSH 
HairpinNode  | Num Bases [4] | Left Index [4] | Right Index [7] | Norm Constant [1.000000000000000] // Hairpin node U789:A792
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.006329114,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.094936709,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.094936709,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.803797468,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U789
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.423076923,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.115384615,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.423076923,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.038461538,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A790
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.576923077,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.038461538,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.346153846,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.038461538,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G791
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.807692308,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.115384615,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.038461538,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.038461538,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A792
