Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node G11 - C18 from junction 
BasepairNode | Deletion Probability [0.0000045283410407] | Pair Probability [[0.008053456,0.015930260,0.009181313,0.175754462,0.000000000],[0.015397884,0.008038891,0.245211997,0.011168415,0.000000000],[0.009166555,0.270570173,0.001745108,0.022254230,0.000000000],[0.166956691,0.011251217,0.020730033,0.008589315,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.680425536,0.318740281,0.000798138,0.000036045] | Right Letter Distribution [0.277777778,0.055555556,0.611111111,0.055555556,0.000000000] | Left Index [1] | Right Index [8] // Basepair G11 - C18 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.065340768,0.060719131,0.015625149,0.106197426,0.000000000],[0.103735802,0.060596947,0.001890102,0.001890102,0.000000000],[0.140329191,0.001890102,0.158604543,0.078639827,0.000000000],[0.084541987,0.102483673,0.015625149,0.001890102,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair G12 - U17 tSH 
HairpinNode  | Num Bases [4] | Left Index [3] | Right Index [6] | Norm Constant [1.000000000000000] // Hairpin node U13:C16
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.003205128,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.137820513,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.048076923,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.810897436,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position U13
Interaction  | Interacting Bases [2,2] | Pair Probability [[0.645833333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.020833333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.270833333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.062500000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G14
Interaction  | Interacting Bases [3,3] | Pair Probability [[0.645833333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.145833333,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.145833333,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.062500000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position G15
Interaction  | Interacting Bases [4,4] | Pair Probability [[0.270833333,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.354166667,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.104166667,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.270833333,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position C16
