Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [3] // Initial node C319 - G323 from junction 
BasepairNode | Deletion Probability [0.0000000002889971] | Pair Probability [[0.009144630,0.017165752,0.010484008,0.190189591,0.000000000],[0.018463087,0.009213143,0.244318979,0.013008228,0.000000000],[0.010534317,0.213869704,0.001991973,0.023268171,0.000000000],[0.191242613,0.012802444,0.024618634,0.009684725,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.000000000,0.006034093,0.845778649,0.146829587,0.001307387,0.000050284] | Right Letter Distribution [0.441176471,0.147058824,0.147058824,0.264705882,0.000000000] | Left Index [1] | Right Index [3] // Basepair C319 - G323 cWW 
HairpinNode  | Num Bases [1] | Left Index [2] | Right Index [2] | Norm Constant [1.000000000000000] // Hairpin node A320:A320
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.611111111,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.055555556,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.166666667,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.166666667,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Hairpin conserved non-basepairing position A320
