| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 4 I | 6 5 3 | 7 5 I | 8 6 4 | 9 6 I | 10 7 | 11 6 I | 12 6 5 | 13 5 I | 14 5 6 | 15 2 I | 16 2 7 | 17 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_69106.1_Instance_1 IL_69106.1_IL_2FQN_002_C7_G42 | C | G | C | U | A | A | AA | G | ||||||||||||||
| IL_69106.1_Sequence_1 IL_69106.1_IL_2FQN_002_C7_G42 | C | G | C | U | * | A | A | AA | G | true | 95 | 0 | 0 | 0.44 | ||||||||
| IL_69106.1_Instance_2 IL_69106.1_IL_4A1B_070_G1648_C1846 | G | G | U | A | U | U | U | C | ||||||||||||||
| IL_69106.1_Sequence_2 IL_69106.1_IL_4A1B_070_G_1648_C_1846 | G | G | U | A | * | U | U | U | C | true | 100 | 0 | 0 | 0.00 |
1 2 s35 1 7 cWW 2 3 s35 2 7 s55 3 4 s35 3 6 cWW 4 5 cWW 4 6 s55 5 6 s35JAR3D SCFG/MRF model for IL_69106.1:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node C7 - G42 from junction BasepairNode | Deletion Probability [0.0000000083615247] | Pair Probability [[0.010112949,0.018987468,0.011731285,0.192935737,0.000000000],[0.018987829,0.008487010,0.221492059,0.013594505,0.000000000],[0.011731300,0.221491395,0.002149724,0.025679421,0.000000000],[0.192935850,0.013594439,0.025679804,0.010409224,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.011890606,0.487514863,0.487514863,0.012485137,0.000594530] | Right Letter Distribution [0.500000000,0.100000000,0.100000000,0.300000000,0.000000000] | Left Index [1] | Right Index [7] // Basepair C7 - G42 cWW FixedNode | Deletion Probability [0.0050000000000000] | Letter Distribution [0.125000000,0.125000000,0.625000000,0.125000000,0.000000000] | Position [1] | Left Index [2] | Right Index [6] // Fixed node on left InitialNode | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [1.000000000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // New Initial node after Fixed node BasepairNode | Deletion Probability [0.0000229437914523] | Pair Probability [[0.014186139,0.093208055,0.015119878,0.036059617,0.000000000],[0.203931270,0.019375140,0.029609949,0.016807408,0.000000000],[0.015143611,0.026774010,0.004305194,0.032808107,0.000000000],[0.036768848,0.016738942,0.175416410,0.263747423,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.991950402,0.007999600,0.000049998] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // Basepair C9 - A39 cWW BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009183469,0.022285751,0.009814417,0.220857782,0.000000000],[0.022291510,0.009418174,0.193045342,0.010327057,0.000000000],[0.009814439,0.193043865,0.002150936,0.025717104,0.000000000],[0.220868443,0.010326961,0.025722659,0.015132092,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [5] // Basepair U10 - A38 cWW HairpinNode | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_69106.1:
> IL_69106.1 IL_2FQN_002 C 7 G 42 CGCU*AAAAG > IL_69106.1 IL_4A1B_070 G 1648 C 1846 GGUA*UUUC