| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 5 2 | 5 5 I | 6 6 3 | 7 6 I | 8 7 4 | 9 7 I | 10 8 5 | 11 8 I | 12 9 | 13 8 I | 14 8 6 | 15 7 I | 16 7 7 | 17 6 I | 18 6 8 | 19 5 I | 20 5 9 | 21 4 I | 22 3 10 | 23 2 I | 24 2 11 | 25 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_45794.1_Instance_1 IL_45794.1_IL_3U5H_090_C2156_G2180 | C | G | A | U | G | G | U | G | U | U | G | A | C | G | ||||||||||||||||
| IL_45794.1_Sequence_1 IL_45794.1_IL_3U5H_090_C_2156_G_2180 | C | G | A | U | G | G | * | U | G | U | U | G | A | C | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_45794.1_Instance_2 IL_45794.1_IL_4A1B_085_U2152_A2175 | U | G | A | C | G | G | U | G | A | U | G | A | C | A | ||||||||||||||||
| IL_45794.1_Sequence_2 IL_45794.1_IL_4A1B_085_U_2152_A_2175 | U | G | A | C | G | G | * | U | G | A | U | G | A | C | A | true | 100 | 0 | 0 | 0.00 |
1 10 s35 1 11 cWW 2 9 tSS 2 10 s53 3 4 s55 3 7 s55 3 8 tWW 3 9 s35 4 5 s35 4 7 tWW 5 6 cWW 6 7 s33 7 8 s55 10 11 s55 10 2 6BPh 2 10 6BPh 9 3 6BR 2 9 6BRJAR3D SCFG/MRF model for IL_45794.1:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [11] // Initial node C2156 - G2180 from junction BasepairNode | Deletion Probability [0.0000001182498160] | Pair Probability [[0.009573432,0.018670696,0.010738592,0.199847452,0.000000000],[0.022636955,0.009050270,0.214230681,0.012151330,0.000000000],[0.010821283,0.200582138,0.002151860,0.023718468,0.000000000],[0.214249849,0.011785171,0.027717608,0.012074217,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.023781213,0.951248514,0.023781213,0.001189061] | Right Letter Distribution [0.125000000,0.625000000,0.125000000,0.125000000,0.000000000] | Left Index [1] | Right Index [11] // Basepair C2156 - G2180 cWW FixedNode | Deletion Probability [0.0050000000000000] | Letter Distribution [0.906250000,0.031250000,0.031250000,0.031250000,0.000000000] | Position [2] | Left Index [2] | Right Index [10] // Fixed node on right InitialNode | Left Length Distribution [1.000000000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.991950402,0.007999600,0.000049998] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [9] // New Initial node after Fixed node BasepairNode | Deletion Probability [0.0000229437914523] | Pair Probability [[0.000828022,0.001039259,0.008821390,0.001017059,0.000000000],[0.000180669,0.000180669,0.000903347,0.000180669,0.000000000],[0.113707142,0.117192079,0.651951059,0.102553278,0.000000000],[0.000180669,0.000180669,0.000903347,0.000180669,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.991950402,0.007999600,0.000049998] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [9] // Basepair G2157 - G2177 tSS BasepairNode | Deletion Probability [0.0000000006094467] | Pair Probability [[0.022062116,0.052061168,0.004657104,0.485318270,0.000000000],[0.021929599,0.060153984,0.019602286,0.060262558,0.000000000],[0.004657104,0.026684972,0.023169287,0.051844976,0.000000000],[0.048915432,0.051457529,0.021223473,0.046000141,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.023781213,0.951248514,0.023781213,0.001189061] | Left Letter Distribution [0.125000000,0.375000000,0.125000000,0.375000000,0.000000000] | Right Length Distribution [0.023781213,0.951248514,0.023781213,0.001189061] | Right Letter Distribution [0.375000000,0.125000000,0.125000000,0.375000000,0.000000000] | Left Index [3] | Right Index [8] // Basepair A2158 - U2176 tWW BasepairNode | Deletion Probability [0.0000229437914523] | Pair Probability [[0.350791599,0.040670272,0.003713382,0.018474231,0.000000000],[0.038122680,0.015188207,0.012119555,0.015027400,0.000000000],[0.003713382,0.012224256,0.390946071,0.024547920,0.000000000],[0.018369341,0.015013760,0.022729598,0.018348346,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.991950402,0.007999600,0.000049998] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [7] // Basepair G2160 - G2174 tWW BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.016500430,0.310288742,0.015571103,0.044672112,0.000000000],[0.014475176,0.011549597,0.038212544,0.015431970,0.000000000],[0.015226490,0.044298882,0.003453650,0.364972803,0.000000000],[0.037922120,0.017096803,0.015161977,0.035165601,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [5] | Right Index [6] // Basepair G2161 - U2173 cWW HairpinNode | Num Bases [1] | Left Index [6] | Right Index [6] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_45794.1:
> IL_45794.1 IL_3U5H_090 C 2156 G 2180 CGAUGG*UGUUGACG > IL_45794.1 IL_4A1B_085 U 2152 A 2175 UGACGG*UGAUGACA