| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 3 3 | 7 3 I | 8 3 4 | 9 4 I | 10 5 | 11 4 I | 12 3 5 | 13 3 I | 14 3 6 | 15 2 I | 16 2 7 | 17 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_50911.1_Instance_1 IL_50911.1_IL_1FJG_041_U1052_G1206 | U | G | C | A | U | A | U | G | ||||||||||||||
| IL_50911.1_Sequence_1 IL_50911.1_IL_1FJG_041_U_1052_G_1206 | U | G | C | A | U | * | A | U | G | true | 100 | 0 | 0 | 0.00 |
1 7 cWW 2 4 s53 2 5 wat 3 4 s35 3 6 cWS 3 7 s55 4 5 cWW 5 6 s35JAR3D SCFG/MRF model for IL_50911.1:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node U1052 - G1206 from junction BasepairNode | Deletion Probability [0.0000224390099112] | Pair Probability [[0.013147005,0.014933664,0.015708775,0.039123268,0.000000000],[0.320116843,0.016220977,0.045702007,0.017638328,0.000000000],[0.016064303,0.039422890,0.003563041,0.015642218,0.000000000],[0.046087059,0.015920763,0.366205057,0.014503803,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.989901010,0.009999000,0.000099990] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.989901010,0.009999000,0.000099990] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Basepair U1052 - G1206 cWW ClusterNode | Deletion Probability [0.000000000000015254027177953870000000000000000000000000000000] | Num Left Bases [3] | Num Right Bases [2] | Left Index [2] | Right Index [6] | Norm Constant [0.268360316384108] // Cluster node G1053:U1056 and A1204:U1205 Interaction | Interacting Bases [1,4] | Pair Probability [[0.008609557,0.008609557,0.008609557,0.008609557,0.000000000],[0.008609557,0.008609557,0.008609557,0.008609557,0.000000000],[0.870856651,0.008609557,0.008609557,0.008609557,0.000000000],[0.008609557,0.008609557,0.008609557,0.008609557,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Cluster Interaction G1053 - A1204 wat Interaction | Interacting Bases [3,4] | Pair Probability [[0.009206316,0.020335270,0.009916234,0.209350778,0.000000000],[0.024742834,0.009627484,0.195778801,0.010479833,0.000000000],[0.009933160,0.194648267,0.002175103,0.023883287,0.000000000],[0.227411257,0.010406240,0.028134421,0.013970716,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Cluster Interaction U1056 - A1204 cWW Interaction | Interacting Bases [2,5] | Pair Probability [[0.176024722,0.177887855,0.157441102,0.206137050,0.000000000],[0.017524598,0.012464556,0.012725025,0.014365445,0.000000000],[0.011968742,0.015288477,0.159911912,0.009707613,0.000000000],[0.007361925,0.008315159,0.006187823,0.006687996,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] // Cluster Interaction A1055 - U1205 cWS Insertion | Location [1] | Length Distribution [0.045351474,0.907029478,0.045351474,0.002267574] | Letter Distribution [0.166666667,0.500000000,0.166666667,0.166666667,0.000000000]// Insertion after nucleotide 2, position 1 in cluster node InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [5] | Right Index [4] // New Initial node after Cluster HairpinNode | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_50911.1:
> IL_50911.1 IL_1FJG_041 U 1052 G 1206 UGCAU*AUG