| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 4 3 | 7 4 I | 8 5 | 9 4 I | 10 4 4 | 11 3 I | 12 3 5 | 13 2 I | 14 2 6 | 15 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_90459.3_Instance_1 IL_90459.3_IL_4IOA_037_C1132_G1045 | C | G | C | G | A | U | G | |||||||||||||
| IL_90459.3_Sequence_1 IL_90459.3_IL_4IOA_037_C_1132_G_1045 | C | G | C | * | G | A | U | G | true | 98 | 0 | 0 | 0.17 | |||||||
| IL_90459.3_Instance_2 IL_90459.3_IL_2QBG_040_C1121_G1034 | C | G | C | G | A | U | G | |||||||||||||
| IL_90459.3_Sequence_2 IL_90459.3_IL_2QBG_040_C_1121_G_1034 | C | G | C | * | G | A | U | G | true | 98 | 0 | 0 | 0.17 | |||||||
| IL_90459.3_Instance_3 IL_90459.3_IL_3V2F_041_C1121_G1034 | C | G | C | G | A | U | G | |||||||||||||
| IL_90459.3_Sequence_3 IL_90459.3_IL_3V2F_041_C_1121_G_1034 | C | G | C | * | G | A | U | G | true | 98 | 0 | 0 | 0.17 | |||||||
| IL_90459.3_Instance_4 IL_90459.3_IL_4A1C_001_C67_G97 | C | A | A | U | C | A | G | |||||||||||||
| IL_90459.3_Sequence_4 IL_90459.3_IL_4A1C_001_C67_G97 | C | A | A | * | U | C | A | G | true | 100 | 0 | 0 | 0.00 | |||||||
| IL_90459.3_Instance_5 IL_90459.3_IL_3U5H_138_G3328_C3378 | G | U | A | U | U | AAG | C | |||||||||||||
| IL_90459.3_Sequence_5 IL_90459.3_IL_3U5H_138_G_3328_C_3378 | G | U | A | * | U | U | AAG | C | true | 76 | 0 | 0 | 2.31 | |||||||
| IL_90459.3_Instance_6 IL_90459.3_IL_4A1B_129_G3286_C3334 | G | U | A | U | U | CAG | C | |||||||||||||
| IL_90459.3_Sequence_6 IL_90459.3_IL_4A1B_129_G_3286_C_3334 | G | U | A | * | U | U | CAG | C | true | 62 | 0 | 0 | 3.61 | |||||||
| IL_90459.3_Instance_7 IL_90459.3_IL_2Y9B_001_U825_G804 | U | U | G | C | C | G | ||||||||||||||
| IL_90459.3_Sequence_7 IL_90459.3_IL_2Y9B_001_U825_G804 | U | U | G | * | C | C | G | true | 90 | 0 | 0 | 0.98 | ||||||||
| IL_90459.3_Instance_8 IL_90459.3_IL_1S72_085_U2545_G2613 | U | U | C | G | U | GA | G | |||||||||||||
| IL_90459.3_Sequence_8 IL_90459.3_IL_1S72_085_U_2545_G_2613 | U | U | C | * | G | U | GA | G | true | 73 | 0 | 0 | 2.52 | |||||||
| IL_90459.3_Instance_9 IL_90459.3_IL_3U5F_074_G1352_C1373 | G | U | G | U | UA | U | C | |||||||||||||
| IL_90459.3_Sequence_9 IL_90459.3_IL_3U5F_074_G_1352_C_1373 | G | U | G | * | U | U | AU | C | true | 67 | 0 | 0 | 3.14 |
1 2 s35 1 6 cWW 2 3 s35 2 5 cWW 2 6 s55 3 4 cWW 3 5 s55 4 5 s35JAR3D SCFG/MRF model for IL_90459.3:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node C1132 - G1045 from junction BasepairNode | Deletion Probability [0.0000000207694325] | Pair Probability [[0.010059085,0.016709368,0.011765394,0.148424081,0.000000000],[0.079921576,0.009525552,0.200524308,0.013560844,0.000000000],[0.011854065,0.189373536,0.002298327,0.021714464,0.000000000],[0.149974270,0.013138568,0.110603748,0.010552815,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.222432705,0.441810016,0.113721776,0.220721684,0.001252712,0.000061108] | Right Letter Distribution [0.392857143,0.107142857,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair C1132 - G1045 cWW BasepairNode | Deletion Probability [0.0000073600808576] | Pair Probability [[0.026386433,0.120956510,0.119329082,0.026512032,0.000000000],[0.015806411,0.012345035,0.021065763,0.054224136,0.000000000],[0.150766680,0.021860238,0.003890100,0.058563719,0.000000000],[0.023298207,0.069910175,0.016516457,0.258569024,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.883191757,0.005519948,0.110644301,0.000613328,0.000030666] | Right Letter Distribution [0.375000000,0.125000000,0.125000000,0.375000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair G1133 - A1043 cWW BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009833110,0.049199864,0.010754983,0.199307317,0.000000000],[0.018197807,0.008540104,0.211715629,0.011980972,0.000000000],[0.010760300,0.183124357,0.002146804,0.066510832,0.000000000],[0.168917576,0.011971032,0.022875826,0.014163487,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair C1134 - G1042 cWW HairpinNode | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_90459.3:
> IL_90459.3 IL_4IOA_037 C 1132 G 1045 CGC*GAUG > IL_90459.3 IL_2QBG_040 C 1121 G 1034 CGC*GAUG > IL_90459.3 IL_3V2F_041 C 1121 G 1034 CGC*GAUG > IL_90459.3 IL_4A1C_001 C 67 G 97 CAA*UCAG > IL_90459.3 IL_3U5H_138 G 3328 C 3378 GUA*UUAAGC > IL_90459.3 IL_4A1B_129 G 3286 C 3334 GUA*UUCAGC > IL_90459.3 IL_2Y9B_001 U 825 G 804 UUG*CCG > IL_90459.3 IL_1S72_085 U 2545 G 2613 UUC*GUGAG > IL_90459.3 IL_3U5F_074 G 1352 C 1373 GUG*UUAUC