| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 4 I | 6 5 3 | 7 5 I | 8 6 4 | 9 6 I | 10 7 | 11 6 I | 12 6 5 | 13 5 I | 14 5 6 | 15 2 I | 16 2 7 | 17 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_97296.1_Instance_1 IL_97296.1_IL_2O3V_003_C30_G19 | C | G | C | U | A | A | A | A | G | |||||||||||||
| IL_97296.1_Sequence_1 IL_97296.1_IL_2O3V_003_C30_G19 | C | G | C | U | * | A | A | A | A | G | true | 100 | 0 | 0 | 0.00 | |||||||
| IL_97296.1_Instance_2 IL_97296.1_IL_3MEI_004_C7_G17 | C | G | C | C | G | C | C | U | G | |||||||||||||
| IL_97296.1_Sequence_2 IL_97296.1_IL_3MEI_004_C7_G17 | C | G | C | C | * | G | C | C | U | G | true | 95 | 0 | 0 | 0.49 | |||||||
| IL_97296.1_Instance_3 IL_97296.1_IL_3V2F_105_G2843_C2874 | G | G | G | G | C | C | GA | C | ||||||||||||||
| IL_97296.1_Sequence_3 IL_97296.1_IL_3V2F_105_G_2843_C_2874 | G | G | G | G | * | C | C | GA | C | true | 85 | 0 | 0 | 1.45 | ||||||||
| IL_97296.1_Instance_4 IL_97296.1_IL_3U5F_017_C270_G285 | C | A | U | G | U | G | G | |||||||||||||||
| IL_97296.1_Sequence_4 IL_97296.1_IL_3U5F_017_C270_G285 | C | A | U | G | * | U | G | G | true | 88 | 0 | 0 | 1.12 |
1 2 s35 1 7 cWW 2 3 s35 2 7 s55 3 4 s35 3 6 cWS 4 5 cWW 5 6 s35JAR3D SCFG/MRF model for IL_97296.1:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Initial node C30 - G19 from junction BasepairNode | Deletion Probability [0.0000001177014991] | Pair Probability [[0.009878188,0.017748468,0.011469828,0.188961043,0.000000000],[0.019498419,0.008363241,0.238084568,0.013495422,0.000000000],[0.011542717,0.215631747,0.002108490,0.024257963,0.000000000],[0.189509081,0.013172006,0.026116132,0.010162687,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.250611247,0.495110024,0.250764059,0.003361858,0.000152812] | Right Letter Distribution [0.416666667,0.083333333,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [7] // Basepair C30 - G19 cWW FixedNode | Deletion Probability [0.0050000000000000] | Letter Distribution [0.250000000,0.083333333,0.583333333,0.083333333,0.000000000] | Position [1] | Left Index [2] | Right Index [6] // Fixed node on left InitialNode | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [1.000000000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // New Initial node after Fixed node BasepairNode | Deletion Probability [0.0000016375373120] | Pair Probability [[0.012055565,0.018331342,0.011355527,0.017534010,0.000000000],[0.145009686,0.144826619,0.129873228,0.134137228,0.000000000],[0.085274723,0.108121990,0.019701983,0.086598223,0.000000000],[0.012763005,0.014039013,0.050235073,0.010142786,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.995990040,0.003999960,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.496627836,0.496627836,0.006437768,0.000306560] | Right Letter Distribution [0.375000000,0.375000000,0.125000000,0.125000000,0.000000000] | Left Index [3] | Right Index [6] // Basepair C32 - A17 cWS BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.011240200,0.090328744,0.011978303,0.156393929,0.000000000],[0.018867816,0.009331214,0.170326246,0.012994719,0.000000000],[0.011897924,0.171543763,0.002429090,0.112687596,0.000000000],[0.166335353,0.013385023,0.023141294,0.017118787,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [5] // Basepair U33 - A15 cWW HairpinNode | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_97296.1:
> IL_97296.1 IL_2O3V_003 C 30 G 19 CGCU*AAAAG > IL_97296.1 IL_3MEI_004 C 7 G 17 CGCC*GCCUG > IL_97296.1 IL_3V2F_105 G 2843 C 2874 GGGG*CCGAC > IL_97296.1 IL_3U5F_017 C 270 G 285 CAUG*UGG