| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 4 | 7 3 I | 8 3 3 | 9 2 I | 10 2 4 | 11 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_13069.3_Instance_1 IL_13069.3_IL_2QBG_026_G775_C791 | G | G | G | C | AAU | C | ||||||||||
| IL_13069.3_Sequence_1 IL_13069.3_IL_2QBG_026_G775_C791 | G | G | G | * | C | AAU | C | true | 100 | 0 | 0 | 0.00 | ||||
| IL_13069.3_Instance_2 IL_13069.3_IL_3V2F_023_G775_C791 | G | G | A | U | AAC | C | ||||||||||
| IL_13069.3_Sequence_2 IL_13069.3_IL_3V2F_023_G775_C791 | G | G | A | * | U | AAC | C | true | 98 | 0 | 0 | 0.25 | ||||
| IL_13069.3_Instance_3 IL_13069.3_IL_1S72_031_G868_C884 | G | G | G | C | CAU | C | ||||||||||
| IL_13069.3_Sequence_3 IL_13069.3_IL_1S72_031_G868_C884 | G | G | G | * | C | CAU | C | true | 88 | 0 | 0 | 1.19 | ||||
| IL_13069.3_Instance_4 IL_13069.3_IL_4IOA_020_G788_C804 | G | G | A | U | AAC | C | ||||||||||
| IL_13069.3_Sequence_4 IL_13069.3_IL_4IOA_020_G788_C804 | G | G | A | * | U | AAC | C | true | 98 | 0 | 0 | 0.25 | ||||
| IL_13069.3_Instance_5 IL_13069.3_IL_3U5H_035_G907_C923 | G | G | G | U | AAU | C | ||||||||||
| IL_13069.3_Sequence_5 IL_13069.3_IL_3U5H_035_G907_C923 | G | G | G | * | U | AAU | C | true | 99 | 0 | 0 | 0.11 | ||||
| IL_13069.3_Instance_6 IL_13069.3_IL_4A1B_040_G932_C948 | G | G | G | U | AAU | C | ||||||||||
| IL_13069.3_Sequence_6 IL_13069.3_IL_4A1B_040_G932_C948 | G | G | G | * | U | AAU | C | true | 99 | 0 | 0 | 0.11 |
1 2 s55 1 3 s53 1 4 cWW 2 3 cWW 3 4 s33JAR3D SCFG/MRF model for IL_13069.3:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node G775 - C791 from junction BasepairNode | Deletion Probability [0.0000000000000155] | Pair Probability [[0.009810372,0.019985697,0.011358953,0.186173951,0.000000000],[0.016552873,0.008089349,0.200518679,0.012762933,0.000000000],[0.011215968,0.263443051,0.002068393,0.026530626,0.000000000],[0.185098881,0.013397366,0.022885515,0.010107394,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.008193363,0.983203605,0.008193363,0.000409668] | Left Letter Distribution [0.062500000,0.062500000,0.812500000,0.062500000,0.000000000] | Right Length Distribution [0.000000000,0.000000000,0.008193363,0.983203605,0.008193363,0.000409668] | Right Letter Distribution [0.575000000,0.175000000,0.025000000,0.225000000,0.000000000] | Left Index [1] | Right Index [4] // Basepair G775 - C791 cWW BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.011529978,0.114026310,0.011927368,0.164155828,0.000000000],[0.016602246,0.009385099,0.140755504,0.012500592,0.000000000],[0.011763808,0.164040638,0.002486250,0.147401099,0.000000000],[0.140179758,0.013269385,0.020057334,0.019918804,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair G777 - C787 cWW HairpinNode | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_13069.3:
> IL_13069.3 IL_2QBG_026 G 775 C 791 GGG*CAAUC > IL_13069.3 IL_3V2F_023 G 775 C 791 GGA*UAACC > IL_13069.3 IL_1S72_031 G 868 C 884 GGG*CCAUC > IL_13069.3 IL_4IOA_020 G 788 C 804 GGA*UAACC > IL_13069.3 IL_3U5H_035 G 907 C 923 GGG*UAAUC > IL_13069.3 IL_4A1B_040 G 932 C 948 GGG*UAAUC