| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 4 3 | 7 4 I | 8 5 4 | 9 5 I | 10 6 | 11 5 I | 12 5 5 | 13 4 I | 14 4 6 | 15 3 I | 16 3 7 | 17 2 I | 18 2 8 | 19 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_41766.6_Instance_1 IL_41766.6_IL_1S72_012_G362_C290 | G | A | C | G | C | A | G | C | ||||||||||||||||
| IL_41766.6_Sequence_1 IL_41766.6_IL_1S72_012_G362_C290 | G | A | C | G | * | C | A | G | C | true | 87 | 0 | 0 | 1.20 | ||||||||||
| IL_41766.6_Instance_2 IL_41766.6_IL_4A1B_103_U2724_A2710 | U | A | C | A | U | U | G | A | ||||||||||||||||
| IL_41766.6_Sequence_2 IL_41766.6_IL_4A1B_103_U_2724_A_2710 | U | A | C | A | * | U | U | G | A | true | 77 | 0 | 0 | 2.23 | ||||||||||
| IL_41766.6_Instance_3 IL_41766.6_IL_4BPP_089_A1676_U1649 | A | A | U | A | U | U | C | U | ||||||||||||||||
| IL_41766.6_Sequence_3 IL_41766.6_IL_4BPP_089_A_1676_U_1649 | A | A | U | A | * | U | U | C | U | true | 87 | 0 | 0 | 1.26 | ||||||||||
| IL_41766.6_Instance_4 IL_41766.6_IL_2QBG_041_G1038_C1117 | G | A | A | G | C | G | G | C | ||||||||||||||||
| IL_41766.6_Sequence_4 IL_41766.6_IL_2QBG_041_G_1038_C_1117 | G | A | A | G | * | C | G | G | C | true | 88 | 0 | 0 | 1.18 | ||||||||||
| IL_41766.6_Instance_5 IL_41766.6_IL_4BPP_086_U1635_A1690 | U | C | U | G | C | C | U | A | ||||||||||||||||
| IL_41766.6_Sequence_5 IL_41766.6_IL_4BPP_086_U_1635_A_1690 | U | C | U | G | * | C | C | U | A | true | 73 | 0 | 0 | 2.60 | ||||||||||
| IL_41766.6_Instance_6 IL_41766.6_IL_1D4R_001_G22_C7 | G | A | C | C | G | A | C | C | ||||||||||||||||
| IL_41766.6_Sequence_6 IL_41766.6_IL_1D4R_001_G22_C7 | G | A | C | C | * | G | A | C | C | true | 85 | 0 | 0 | 1.43 | ||||||||||
| IL_41766.6_Instance_7 IL_41766.6_IL_4EYA_008_C6_G9 | C | U | U | G | C | U | U | G | ||||||||||||||||
| IL_41766.6_Sequence_7 IL_41766.6_IL_4EYA_008_C6_G9 | C | U | U | G | * | C | U | U | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_41766.6_Instance_8 IL_41766.6_IL_3U5H_106_U2718_A2738 | U | U | G | A | U | A | C | A | ||||||||||||||||
| IL_41766.6_Sequence_8 IL_41766.6_IL_3U5H_106_U_2718_A_2738 | U | U | G | A | * | U | A | C | A | true | 69 | 0 | 0 | 2.94 | ||||||||||
| IL_41766.6_Instance_9 IL_41766.6_IL_2PN4_004_G102_C65 | G | U | C | G | C | U | U | C | ||||||||||||||||
| IL_41766.6_Sequence_9 IL_41766.6_IL_2PN4_004_G102_C65 | G | U | C | G | * | C | U | U | C | true | 93 | 0 | 0 | 0.69 | ||||||||||
| IL_41766.6_Instance_10 IL_41766.6_IL_1MFQ_004_G138_C159 | G | A | C | C | G | A | C | C | ||||||||||||||||
| IL_41766.6_Sequence_10 IL_41766.6_IL_1MFQ_004_G138_C159 | G | A | C | C | * | G | A | C | C | true | 85 | 0 | 0 | 1.43 | ||||||||||
| IL_41766.6_Instance_11 IL_41766.6_IL_1GID_008_G103_C217 | G | A | A | U | U | A | G | C | C | |||||||||||||||
| IL_41766.6_Sequence_11 IL_41766.6_IL_1GID_008_G103_C217 | G | A | A | U | U | * | A | G | C | C | true | 47 | 0 | 0 | 5.07 | |||||||||
| IL_41766.6_Instance_12 IL_41766.6_IL_1GID_001_G103_C217 | G | A | A | U | U | A | G | C | C | |||||||||||||||
| IL_41766.6_Sequence_12 IL_41766.6_IL_1GID_001_G103_C217 | G | A | A | U | U | * | A | G | C | C | true | 47 | 0 | 0 | 5.07 | |||||||||
| IL_41766.6_Instance_13 IL_41766.6_IL_4BPP_043_G935_C848 | G | U | U | U | U | G | G | A | C | |||||||||||||||
| IL_41766.6_Sequence_13 IL_41766.6_IL_4BPP_043_G935_C848 | G | U | U | U | U | * | G | G | A | C | true | 22 | 0 | 0 | 7.37 | |||||||||
| IL_41766.6_Instance_14 IL_41766.6_IL_4K27_001_C49_G7 | C | C | U | G | C | C | U | G | ||||||||||||||||
| IL_41766.6_Sequence_14 IL_41766.6_IL_4K27_001_C49_G7 | C | C | U | G | * | C | C | U | G | true | 77 | 0 | 0 | 2.17 | ||||||||||
| IL_41766.6_Instance_15 IL_41766.6_IL_3WBM_002_A10_U17 | A | C | C | C | G | A | C | U | ||||||||||||||||
| IL_41766.6_Sequence_15 IL_41766.6_IL_3WBM_002_A10_U17 | A | C | C | C | * | G | A | C | U | true | 63 | 0 | 0 | 3.56 | ||||||||||
| IL_41766.6_Instance_16 IL_41766.6_IL_3WBM_003_A10_U17 | A | C | C | C | G | A | C | U | ||||||||||||||||
| IL_41766.6_Sequence_16 IL_41766.6_IL_3WBM_003_A10_U17 | A | C | C | C | * | G | A | C | U | true | 63 | 0 | 0 | 3.56 | ||||||||||
| IL_41766.6_Instance_17 IL_41766.6_IL_3TZR_003_G102_C65 | G | U | C | G | C | U | U | C | ||||||||||||||||
| IL_41766.6_Sequence_17 IL_41766.6_IL_3TZR_003_G102_C65 | G | U | C | G | * | C | U | U | C | true | 93 | 0 | 0 | 0.69 | ||||||||||
| IL_41766.6_Instance_18 IL_41766.6_IL_3U5F_046_G957_C870 | G | U | U | U | U | G | G | A | C | |||||||||||||||
| IL_41766.6_Sequence_18 IL_41766.6_IL_3U5F_046_G957_C870 | G | U | U | U | U | * | G | G | A | C | true | 22 | 0 | 0 | 7.37 | |||||||||
| IL_41766.6_Instance_19 IL_41766.6_IL_4IOA_041_G1196_C1178 | G | U | C | U | A | U | U | C | ||||||||||||||||
| IL_41766.6_Sequence_19 IL_41766.6_IL_4IOA_041_G_1196_C_1178 | G | U | C | U | * | A | U | U | C | true | 87 | 0 | 0 | 1.26 | ||||||||||
| IL_41766.6_Instance_20 IL_41766.6_IL_3U5H_135_C3311_G3303 | C | U | U | A | U | U | U | G | ||||||||||||||||
| IL_41766.6_Sequence_20 IL_41766.6_IL_3U5H_135_C_3311_G_3303 | C | U | U | A | * | U | U | U | G | true | 97 | 0 | 0 | 0.33 | ||||||||||
| IL_41766.6_Instance_21 IL_41766.6_IL_1D4R_003_G22_C7 | G | A | C | C | G | A | C | C | ||||||||||||||||
| IL_41766.6_Sequence_21 IL_41766.6_IL_1D4R_003_G22_C7 | G | A | C | C | * | G | A | C | C | true | 85 | 0 | 0 | 1.43 | ||||||||||
| IL_41766.6_Instance_22 IL_41766.6_IL_3U5H_043_A1006_U1044 | A | U | U | A | U | U | C | U | ||||||||||||||||
| IL_41766.6_Sequence_22 IL_41766.6_IL_3U5H_043_A_1006_U_1044 | A | U | U | A | * | U | U | C | U | true | 81 | 0 | 0 | 1.77 | ||||||||||
| IL_41766.6_Instance_23 IL_41766.6_IL_3R2D_002_C6_G9 | C | U | U | G | C | U | U | G | ||||||||||||||||
| IL_41766.6_Sequence_23 IL_41766.6_IL_3R2D_002_C6_G9 | C | U | U | G | * | C | U | U | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_41766.6_Instance_24 IL_41766.6_IL_280D_001_C5_G20 | C | U | U | G | C | U | U | G | ||||||||||||||||
| IL_41766.6_Sequence_24 IL_41766.6_IL_280D_001_C5_G20 | C | U | U | G | * | C | U | U | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_41766.6_Instance_25 IL_41766.6_IL_1JID_002_G138_C159 | G | A | C | C | G | A | C | C | ||||||||||||||||
| IL_41766.6_Sequence_25 IL_41766.6_IL_1JID_002_G138_C159 | G | A | C | C | * | G | A | C | C | true | 85 | 0 | 0 | 1.43 | ||||||||||
| IL_41766.6_Instance_26 IL_41766.6_IL_1S72_018_C558_G599 | C | U | C | G | C | A | C | G | ||||||||||||||||
| IL_41766.6_Sequence_26 IL_41766.6_IL_1S72_018_C558_G599 | C | U | C | G | * | C | A | C | G | true | 82 | 0 | 0 | 1.68 | ||||||||||
| IL_41766.6_Instance_27 IL_41766.6_IL_4K27_003_C12_G44 | C | C | U | G | C | C | U | G | ||||||||||||||||
| IL_41766.6_Sequence_27 IL_41766.6_IL_4K27_003_C12_G44 | C | C | U | G | * | C | C | U | G | true | 77 | 0 | 0 | 2.17 | ||||||||||
| IL_41766.6_Instance_28 IL_41766.6_IL_4A1B_127_C3271_G3263 | C | U | U | A | U | U | U | G | ||||||||||||||||
| IL_41766.6_Sequence_28 IL_41766.6_IL_4A1B_127_C_3271_G_3263 | C | U | U | A | * | U | U | U | G | true | 97 | 0 | 0 | 0.33 | ||||||||||
| IL_41766.6_Instance_29 IL_41766.6_IL_3U5H_134_C3249_G3238 | C | U | U | G | C | U | U | G | ||||||||||||||||
| IL_41766.6_Sequence_29 IL_41766.6_IL_3U5H_134_C_3249_G_3238 | C | U | U | G | * | C | U | U | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_41766.6_Instance_30 IL_41766.6_IL_4EYA_012_C6_G9 | C | U | U | G | C | U | U | G | ||||||||||||||||
| IL_41766.6_Sequence_30 IL_41766.6_IL_4EYA_012_C6_G9 | C | U | U | G | * | C | U | U | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_41766.6_Instance_31 IL_41766.6_IL_2NOK_004_G102_C65 | G | U | C | G | C | U | U | C | ||||||||||||||||
| IL_41766.6_Sequence_31 IL_41766.6_IL_2NOK_004_G102_C65 | G | U | C | G | * | C | U | U | C | true | 93 | 0 | 0 | 0.69 | ||||||||||
| IL_41766.6_Instance_32 IL_41766.6_IL_4K27_002_C8_G48 | C | C | U | G | C | C | U | G | ||||||||||||||||
| IL_41766.6_Sequence_32 IL_41766.6_IL_4K27_002_C8_G48 | C | C | U | G | * | C | C | U | G | true | 77 | 0 | 0 | 2.17 | ||||||||||
| IL_41766.6_Instance_33 IL_41766.6_IL_4BPP_045_C928_G856 | C | A | A | A | U | G | G | G | G | |||||||||||||||
| IL_41766.6_Sequence_33 IL_41766.6_IL_4BPP_045_C928_G856 | C | A | A | A | * | U | G | G | G | G | true | 44 | 0 | 0 | 5.30 | |||||||||
| IL_41766.6_Instance_34 IL_41766.6_IL_3U5F_047_G871_C956 | G | G | U | C | G | G | A | C | ||||||||||||||||
| IL_41766.6_Sequence_34 IL_41766.6_IL_3U5F_047_G871_C956 | G | G | U | C | * | G | G | A | C | true | 76 | 0 | 0 | 2.26 | ||||||||||
| IL_41766.6_Instance_35 IL_41766.6_IL_4BPP_044_A849_U934 | A | G | U | U | A | G | A | U | ||||||||||||||||
| IL_41766.6_Sequence_35 IL_41766.6_IL_4BPP_044_A849_U934 | A | G | U | U | * | A | G | A | U | true | 69 | 0 | 0 | 2.90 | ||||||||||
| IL_41766.6_Instance_36 IL_41766.6_IL_3U5F_090_U1723_A1678 | U | U | U | G | C | U | C | A | ||||||||||||||||
| IL_41766.6_Sequence_36 IL_41766.6_IL_3U5F_090_U_1723_A_1678 | U | U | U | G | * | C | U | C | A | true | 84 | 0 | 0 | 1.53 | ||||||||||
| IL_41766.6_Instance_37 IL_41766.6_IL_4EYA_010_C6_G9 | C | U | U | G | C | U | U | G | ||||||||||||||||
| IL_41766.6_Sequence_37 IL_41766.6_IL_4EYA_010_C6_G9 | C | U | U | G | * | C | U | U | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_41766.6_Instance_38 IL_41766.6_IL_4BPP_051_G1046_U1022 | G | C | A | C | G | G | A | U | ||||||||||||||||
| IL_41766.6_Sequence_38 IL_41766.6_IL_4BPP_051_G_1046_U_1022 | G | C | A | C | * | G | G | A | U | true | 61 | 0 | 0 | 3.70 | ||||||||||
| IL_41766.6_Instance_39 IL_41766.6_IL_3U5F_048_C950_G878 | C | A | A | G | C | G | G | G | G | |||||||||||||||
| IL_41766.6_Sequence_39 IL_41766.6_IL_3U5F_048_C950_G878 | C | A | A | G | * | C | G | G | G | G | true | 48 | 0 | 0 | 4.97 | |||||||||
| IL_41766.6_Instance_40 IL_41766.6_IL_3U5F_008_G109_C305 | G | U | U | A | U | U | U | C | ||||||||||||||||
| IL_41766.6_Sequence_40 IL_41766.6_IL_3U5F_008_G109_C305 | G | U | U | A | * | U | U | U | C | true | 97 | 0 | 0 | 0.25 | ||||||||||
| IL_41766.6_Instance_41 IL_41766.6_IL_3U5F_049_G885_C927 | G | U | A | U | A | G | A | C | ||||||||||||||||
| IL_41766.6_Sequence_41 IL_41766.6_IL_3U5F_049_G885_C927 | G | U | A | U | * | A | G | A | C | true | 72 | 0 | 0 | 2.69 | ||||||||||
| IL_41766.6_Instance_42 IL_41766.6_IL_2AW7_036_U662_A743 | U | A | G | A | G | U | G | G | A | |||||||||||||||
| IL_41766.6_Sequence_42 IL_41766.6_IL_2AW7_036_U662_A743 | U | A | G | A | G | * | U | G | G | A | true | 27 | 0 | 0 | 6.93 | |||||||||
| IL_41766.6_Instance_43 IL_41766.6_IL_4BPP_008_G105_C296 | G | U | U | A | U | U | U | C | ||||||||||||||||
| IL_41766.6_Sequence_43 IL_41766.6_IL_4BPP_008_G105_C296 | G | U | U | A | * | U | U | U | C | true | 97 | 0 | 0 | 0.25 | ||||||||||
| IL_41766.6_Instance_44 IL_41766.6_IL_1G1X_003_G662_U743 | G | A | G | A | G | U | G | G | U | |||||||||||||||
| IL_41766.6_Sequence_44 IL_41766.6_IL_1G1X_003_G662_U743 | G | A | G | A | G | * | U | G | G | U | true | 19 | 0 | 0 | 7.72 | |||||||||
| IL_41766.6_Instance_45 IL_41766.6_IL_402D_001_C111_G106 | C | C | A | G | C | C | A | G | ||||||||||||||||
| IL_41766.6_Sequence_45 IL_41766.6_IL_402D_001_C111_G106 | C | C | A | G | * | C | C | A | G | true | 69 | 0 | 0 | 2.91 | ||||||||||
| IL_41766.6_Instance_46 IL_41766.6_IL_3U5F_055_G1074_U1044 | G | C | A | C | G | G | A | U | ||||||||||||||||
| IL_41766.6_Sequence_46 IL_41766.6_IL_3U5F_055_G_1074_U_1044 | G | C | A | C | * | G | G | A | U | true | 61 | 0 | 0 | 3.70 | ||||||||||
| IL_41766.6_Instance_47 IL_41766.6_IL_1FJG_029_G662_U743 | G | A | G | A | G | U | G | G | U | |||||||||||||||
| IL_41766.6_Sequence_47 IL_41766.6_IL_1FJG_029_G662_U743 | G | A | G | A | G | * | U | G | G | U | true | 19 | 0 | 0 | 7.72 | |||||||||
| IL_41766.6_Instance_48 IL_41766.6_IL_4A1B_047_A1032_U1070 | A | U | U | A | U | U | C | U | ||||||||||||||||
| IL_41766.6_Sequence_48 IL_41766.6_IL_4A1B_047_A_1032_U_1070 | A | U | U | A | * | U | U | C | U | true | 81 | 0 | 0 | 1.77 | ||||||||||
| IL_41766.6_Instance_49 IL_41766.6_IL_2NOK_007_G102_C65 | G | U | C | G | C | U | U | C | ||||||||||||||||
| IL_41766.6_Sequence_49 IL_41766.6_IL_2NOK_007_G102_C65 | G | U | C | G | * | C | U | U | C | true | 93 | 0 | 0 | 0.69 | ||||||||||
| IL_41766.6_Instance_50 IL_41766.6_IL_3U5F_083_A1753_U1647 | A | A | A | A | G | C | G | C | U | |||||||||||||||
| IL_41766.6_Sequence_50 IL_41766.6_IL_3U5F_083_A_1753_U_1647 | A | A | A | A | G | * | C | G | C | U | true | 58 | 0 | 0 | 3.98 | |||||||||
| IL_41766.6_Instance_51 IL_41766.6_IL_2A64_004_G236_C194 | G | G | U | AA | A | U | G | C | C | |||||||||||||||
| IL_41766.6_Sequence_51 IL_41766.6_IL_2A64_004_G236_C194 | G | G | U | AA | A | * | U | G | C | C | true | 18 | 0 | 0 | 7.81 | |||||||||
| IL_41766.6_Instance_52 IL_41766.6_IL_3U5F_078_C1509_G1498 | C | U | U | G | C | U | U | G | ||||||||||||||||
| IL_41766.6_Sequence_52 IL_41766.6_IL_3U5F_078_C_1509_G_1498 | C | U | U | G | * | C | U | U | G | true | 100 | 0 | 0 | 0.00 | ||||||||||
| IL_41766.6_Instance_53 IL_41766.6_IL_1F7Y_003_G26_U42 | G | A | G | A | G | U | G | G | U | |||||||||||||||
| IL_41766.6_Sequence_53 IL_41766.6_IL_1F7Y_003_G26_U42 | G | A | G | A | G | * | U | G | G | U | true | 19 | 0 | 0 | 7.72 | |||||||||
| IL_41766.6_Instance_54 IL_41766.6_IL_2QBG_055_C1557_G1435 | C | C | U | G | C | G | A | A | G | |||||||||||||||
| IL_41766.6_Sequence_54 IL_41766.6_IL_2QBG_055_C_1557_G_1435 | C | C | U | G | C | * | G | A | A | G | true | 37 | 0 | 0 | 6.03 |
1 2 s35 1 8 cWW 2 3 s35 2 7 cWW 2 8 s55 3 4 s35 3 6 cWW 3 7 s55 4 5 cWW 4 6 s55 5 6 s35 6 7 s35 7 8 s35JAR3D SCFG/MRF model for IL_41766.6:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node G362 - C290 from junction BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.006957785,0.031044682,0.007726000,0.166929207,0.000000000],[0.012665965,0.005940363,0.237074222,0.008622507,0.000000000],[0.007698997,0.257196629,0.001503910,0.069207395,0.000000000],[0.153290803,0.008750611,0.016247783,0.009143139,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair G362 - C290 cWW BasepairNode | Deletion Probability [0.0000137278371017] | Pair Probability [[0.034754732,0.130982684,0.116844038,0.026075053,0.000000000],[0.049738314,0.024189615,0.022507864,0.068746157,0.000000000],[0.070256634,0.029528564,0.002488241,0.046827864,0.000000000],[0.045332517,0.078248470,0.020461623,0.233017631,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.925031731,0.074853505,0.000111338,0.000003426] | Left Letter Distribution [0.250000000,0.083333333,0.083333333,0.583333333,0.000000000] | Right Length Distribution [0.962028959,0.037890532,0.000078796,0.000001713] | Right Letter Distribution [0.125000000,0.125000000,0.625000000,0.125000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair A363 - G289 cWW BasepairNode | Deletion Probability [0.0000112217093753] | Pair Probability [[0.034499020,0.052942702,0.116617256,0.018280503,0.000000000],[0.114946246,0.008964170,0.016808599,0.095584687,0.000000000],[0.070111370,0.016038497,0.033987346,0.021253993,0.000000000],[0.018036964,0.080552333,0.094262581,0.207113735,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.869523514,0.111812030,0.018641333,0.000022266,0.000000856] | Left Letter Distribution [0.650000000,0.050000000,0.050000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // Basepair C364 - A288 cWW BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.006917479,0.027832696,0.007686497,0.192071859,0.000000000],[0.019887914,0.006119788,0.188345103,0.008495618,0.000000000],[0.007655131,0.267461875,0.001521626,0.058854920,0.000000000],[0.152192675,0.008637940,0.037076584,0.009242294,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [5] // Basepair G365 - C287 cWW HairpinNode | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_41766.6:
> IL_41766.6 IL_1S72_012 G 362 C 290 GACG*CAGC > IL_41766.6 IL_4A1B_103 U 2724 A 2710 UACA*UUGA > IL_41766.6 IL_4BPP_089 A 1676 U 1649 AAUA*UUCU > IL_41766.6 IL_2QBG_041 G 1038 C 1117 GAAG*CGGC > IL_41766.6 IL_4BPP_086 U 1635 A 1690 UCUG*CCUA > IL_41766.6 IL_1D4R_001 G 22 C 7 GACC*GACC > IL_41766.6 IL_4EYA_008 C 6 G 9 CUUG*CUUG > IL_41766.6 IL_3U5H_106 U 2718 A 2738 UUGA*UACA > IL_41766.6 IL_2PN4_004 G 102 C 65 GUCG*CUUC > IL_41766.6 IL_1MFQ_004 G 138 C 159 GACC*GACC > IL_41766.6 IL_1GID_008 G 103 C 217 GAAUU*AGCC > IL_41766.6 IL_1GID_001 G 103 C 217 GAAUU*AGCC > IL_41766.6 IL_4BPP_043 G 935 C 848 GUUUU*GGAC > IL_41766.6 IL_4K27_001 C 49 G 7 CCUG*CCUG > IL_41766.6 IL_3WBM_002 A 10 U 17 ACCC*GACU > IL_41766.6 IL_3WBM_003 A 10 U 17 ACCC*GACU > IL_41766.6 IL_3TZR_003 G 102 C 65 GUCG*CUUC > IL_41766.6 IL_3U5F_046 G 957 C 870 GUUUU*GGAC > IL_41766.6 IL_4IOA_041 G 1196 C 1178 GUCU*AUUC > IL_41766.6 IL_3U5H_135 C 3311 G 3303 CUUA*UUUG > IL_41766.6 IL_1D4R_003 G 22 C 7 GACC*GACC > IL_41766.6 IL_3U5H_043 A 1006 U 1044 AUUA*UUCU > IL_41766.6 IL_3R2D_002 C 6 G 9 CUUG*CUUG > IL_41766.6 IL_280D_001 C 5 G 20 CUUG*CUUG > IL_41766.6 IL_1JID_002 G 138 C 159 GACC*GACC > IL_41766.6 IL_1S72_018 C 558 G 599 CUCG*CACG > IL_41766.6 IL_4K27_003 C 12 G 44 CCUG*CCUG > IL_41766.6 IL_4A1B_127 C 3271 G 3263 CUUA*UUUG > IL_41766.6 IL_3U5H_134 C 3249 G 3238 CUUG*CUUG > IL_41766.6 IL_4EYA_012 C 6 G 9 CUUG*CUUG > IL_41766.6 IL_2NOK_004 G 102 C 65 GUCG*CUUC > IL_41766.6 IL_4K27_002 C 8 G 48 CCUG*CCUG > IL_41766.6 IL_4BPP_045 C 928 G 856 CAAA*UGGGG > IL_41766.6 IL_3U5F_047 G 871 C 956 GGUC*GGAC > IL_41766.6 IL_4BPP_044 A 849 U 934 AGUU*AGAU > IL_41766.6 IL_3U5F_090 U 1723 A 1678 UUUG*CUCA > IL_41766.6 IL_4EYA_010 C 6 G 9 CUUG*CUUG > IL_41766.6 IL_4BPP_051 G 1046 U 1022 GCAC*GGAU > IL_41766.6 IL_3U5F_048 C 950 G 878 CAAG*CGGGG > IL_41766.6 IL_3U5F_008 G 109 C 305 GUUA*UUUC > IL_41766.6 IL_3U5F_049 G 885 C 927 GUAU*AGAC > IL_41766.6 IL_2AW7_036 U 662 A 743 UAGAG*UGGA > IL_41766.6 IL_4BPP_008 G 105 C 296 GUUA*UUUC > IL_41766.6 IL_1G1X_003 G 662 U 743 GAGAG*UGGU > IL_41766.6 IL_402D_001 C 111 G 106 CCAG*CCAG > IL_41766.6 IL_3U5F_055 G 1074 U 1044 GCAC*GGAU > IL_41766.6 IL_1FJG_029 G 662 U 743 GAGAG*UGGU > IL_41766.6 IL_4A1B_047 A 1032 U 1070 AUUA*UUCU > IL_41766.6 IL_2NOK_007 G 102 C 65 GUCG*CUUC > IL_41766.6 IL_3U5F_083 A 1753 U 1647 AAAAG*CGCU > IL_41766.6 IL_2A64_004 G 236 C 194 GGUAAA*UGCC > IL_41766.6 IL_3U5F_078 C 1509 G 1498 CUUG*CUUG > IL_41766.6 IL_1F7Y_003 G 26 U 42 GAGAG*UGGU > IL_41766.6 IL_2QBG_055 C 1557 G 1435 CCUGC*GAAG