| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 4 3 | 7 4 I | 8 5 | 9 4 I | 10 4 4 | 11 3 I | 12 3 5 | 13 2 I | 14 2 6 | 15 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_12147.1_Instance_1 IL_12147.1_IL_4BPP_063_A1206_U1223 | A | C | A | U | U | U | ||||||||||||||
| IL_12147.1_Sequence_1 IL_12147.1_IL_4BPP_063_A_1206_U_1223 | A | C | A | * | U | U | U | true | 99 | 0 | 0 | 0.09 | ||||||||
| IL_12147.1_Instance_2 IL_12147.1_IL_1LNG_001_U175_G154 | U | A | A | C | G | A | G | |||||||||||||
| IL_12147.1_Sequence_2 IL_12147.1_IL_1LNG_001_U175_G154 | U | A | A | C | * | G | A | G | true | 100 | 0 | 0 | 0.00 |
1 6 cWW 2 3 s35 2 5 tHS 3 4 cWW 3 5 s55 4 5 s35 5 6 s35JAR3D SCFG/MRF model for IL_12147.1:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node A1206 - U1223 from junction BasepairNode | Deletion Probability [0.0000015195492620] | Pair Probability [[0.011134496,0.019611426,0.012682293,0.136578475,0.000000000],[0.168530603,0.012682600,0.118742615,0.013871213,0.000000000],[0.012849956,0.116192085,0.002838101,0.021636967,0.000000000],[0.126193227,0.013057190,0.198002729,0.015396023,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.493381468,0.493381468,0.012635379,0.000601685] | Left Letter Distribution [0.500000000,0.166666667,0.166666667,0.166666667,0.000000000] | Right Length Distribution [0.991950402,0.007999600,0.000049998] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair A1206 - U1223 cWW BasepairNode | Deletion Probability [0.0000229437914523] | Pair Probability [[0.219224696,0.122253927,0.117835681,0.124855324,0.000000000],[0.114760798,0.117297984,0.001355839,0.145387869,0.000000000],[0.001355839,0.001355839,0.006771811,0.001355839,0.000000000],[0.006593576,0.001355839,0.016883297,0.001355839,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.991950402,0.007999600,0.000049998] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair C1207 - U1222 tHS BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009640843,0.020820542,0.010733993,0.213406915,0.000000000],[0.020428208,0.008935347,0.213416622,0.012101297,0.000000000],[0.010799946,0.200886051,0.002149018,0.025786435,0.000000000],[0.200132635,0.011807914,0.025581673,0.013372561,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair A1208 - U1221 cWW HairpinNode | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_12147.1:
> IL_12147.1 IL_4BPP_063 A 1206 U 1223 ACA*UUU > IL_12147.1 IL_1LNG_001 U 175 G 154 UAAC*GAG