| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 4 | 7 3 I | 8 3 3 | 9 2 I | 10 2 4 | 11 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_25300.3_Instance_1 IL_25300.3_IL_1KXK_001_U8_G62 | U | AU | C | G | G | |||||||||||
| IL_25300.3_Sequence_1 IL_25300.3_IL_1KXK_001_U8_G62 | U | AU | C | * | G | G | true | 74 | 0 | 0 | 2.44 | |||||
| IL_25300.3_Instance_2 IL_25300.3_IL_2QBG_032_U913_A863 | U | G | C | G | A | |||||||||||
| IL_25300.3_Sequence_2 IL_25300.3_IL_2QBG_032_U913_A863 | U | G | C | * | G | A | true | 87 | 0 | 0 | 1.22 | |||||
| IL_25300.3_Instance_3 IL_25300.3_IL_3V2F_107_C65_G18 | C | A | G | C | G | |||||||||||
| IL_25300.3_Sequence_3 IL_25300.3_IL_3V2F_107_C65_G18 | C | A | G | * | C | G | true | 97 | 0 | 0 | 0.28 | |||||
| IL_25300.3_Instance_4 IL_25300.3_IL_2OZB_001_U24_G48 | U | A | G | C | G | |||||||||||
| IL_25300.3_Sequence_4 IL_25300.3_IL_2OZB_001_U24_G48 | U | A | G | * | C | G | true | 100 | 0 | 0 | 0.00 | |||||
| IL_25300.3_Instance_5 IL_25300.3_IL_3U5H_046_U1015_G1035 | U | CC | G | U | G | |||||||||||
| IL_25300.3_Sequence_5 IL_25300.3_IL_3U5H_046_U_1015_G_1035 | U | CC | G | * | U | G | true | 68 | 0 | 0 | 3.02 | |||||
| IL_25300.3_Instance_6 IL_25300.3_IL_4IOA_024_G938_C864 | G | C | G | C | C | |||||||||||
| IL_25300.3_Sequence_6 IL_25300.3_IL_4IOA_024_G938_C864 | G | C | G | * | C | C | true | 98 | 0 | 0 | 0.23 | |||||
| IL_25300.3_Instance_7 IL_25300.3_IL_4A1B_032_G800_C780 | G | U | U | A | C | |||||||||||
| IL_25300.3_Sequence_7 IL_25300.3_IL_4A1B_032_G800_C780 | G | U | U | * | A | C | true | 92 | 0 | 0 | 0.72 |
1 2 s35 1 4 cWW 2 3 cWW 2 4 s55 3 4 s35JAR3D SCFG/MRF model for IL_25300.3:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node U8 - G62 from junction BasepairNode | Deletion Probability [0.0000000271147100] | Pair Probability [[0.010702699,0.016783297,0.012494699,0.122953415,0.000000000],[0.140350536,0.011316626,0.140267993,0.014057445,0.000000000],[0.012620575,0.147815512,0.002612924,0.020297266,0.000000000],[0.136064500,0.013442467,0.186203276,0.012016769,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.005028411,0.705988837,0.286619400,0.002262785,0.000100568] | Left Letter Distribution [0.318181818,0.318181818,0.136363636,0.227272727,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Basepair U8 - G62 cWW BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.010385667,0.058169139,0.011455548,0.165758616,0.000000000],[0.017993502,0.008638993,0.193985419,0.012726239,0.000000000],[0.011390673,0.204901754,0.002227363,0.077341640,0.000000000],[0.175133380,0.013032785,0.023085878,0.013773406,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair C11 - G61 cWW HairpinNode | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_25300.3:
> IL_25300.3 IL_1KXK_001 U 8 G 62 UAUC*GG > IL_25300.3 IL_2QBG_032 U 913 A 863 UGC*GA > IL_25300.3 IL_3V2F_107 C 65 G 18 CAG*CG > IL_25300.3 IL_2OZB_001 U 24 G 48 UAG*CG > IL_25300.3 IL_3U5H_046 U 1015 G 1035 UCCG*UG > IL_25300.3 IL_4IOA_024 G 938 C 864 GCG*CC > IL_25300.3 IL_4A1B_032 G 800 C 780 GUU*AC