| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 4 3 | 7 5 I | 8 6 4 | 9 6 I | 10 7 5 | 11 7 I | 12 8 | 13 7 I | 14 7 6 | 15 6 I | 16 6 7 | 17 3 I | 18 3 8 | 19 2 I | 20 2 9 | 21 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_87507.1_Instance_1 IL_87507.1_IL_4A1B_029_G704_C725 | G | A | U | A | G | C | G | U | C | C | ||||||||||||||||
| IL_87507.1_Sequence_1 IL_87507.1_IL_4A1B_029_G704_C725 | G | A | U | A | G | * | C | G | U | C | C | true | 92 | 0 | 0 | 0.94 | ||||||||||
| IL_87507.1_Instance_2 IL_87507.1_IL_3V2F_026_C846_G931 | C | U | G | A | C | G | G | U | G | |||||||||||||||||
| IL_87507.1_Sequence_2 IL_87507.1_IL_3V2F_026_C846_G931 | C | U | G | A | C | * | G | G | U | G | true | 100 | 0 | 0 | 0.00 |
1 2 s35 1 8 s35 1 9 cWW 2 3 perp 2 8 tHW 2 9 s55 3 4 s35 3 7 s33 3 9 perp 4 5 s35 4 7 tHS 5 6 cWW 5 7 s55 6 7 s35 8 9 s35 7 3 6BPh 4 7 6BRJAR3D SCFG/MRF model for IL_87507.1:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [9] // Initial node G704 - C725 from junction BasepairNode | Deletion Probability [0.0000229437914523] | Pair Probability [[0.010112949,0.018987468,0.011731285,0.192935737,0.000000000],[0.018987829,0.008487010,0.221492059,0.013594505,0.000000000],[0.011731300,0.221491395,0.002149724,0.025679421,0.000000000],[0.192935850,0.013594439,0.025679804,0.010409224,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.991950402,0.007999600,0.000049998] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [9] // Basepair G704 - C725 cWW BasepairNode | Deletion Probability [0.0000015195492620] | Pair Probability [[0.018049925,0.238432839,0.002286289,0.022709642,0.000000000],[0.002286289,0.010818673,0.002286289,0.002286289,0.000000000],[0.128092864,0.211972452,0.015616865,0.010943960,0.000000000],[0.002286289,0.002286289,0.023612565,0.306032481,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.493381468,0.493381468,0.012635379,0.000601685] | Right Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000] | Left Index [2] | Right Index [8] // Basepair A705 - C724 tHW FixedNode | Deletion Probability [0.0050000000000000] | Letter Distribution [0.125000000,0.125000000,0.375000000,0.375000000,0.000000000] | Position [1] | Left Index [3] | Right Index [7] // Fixed node on left InitialNode | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [1.000000000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [7] // New Initial node after Fixed node BasepairNode | Deletion Probability [0.0000229437914523] | Pair Probability [[0.043716223,0.044105167,0.388315159,0.047517987,0.000000000],[0.050956855,0.046228647,0.003687073,0.045777520,0.000000000],[0.000526725,0.000526725,0.017863095,0.000526725,0.000000000],[0.002508196,0.000526725,0.306690455,0.000526725,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.991950402,0.007999600,0.000049998] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.991950402,0.007999600,0.000049998] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [7] // Basepair A707 - G722 tHS BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.010112949,0.018987468,0.011731285,0.192935737,0.000000000],[0.018987829,0.008487010,0.221492059,0.013594505,0.000000000],[0.011731300,0.221491395,0.002149724,0.025679421,0.000000000],[0.192935850,0.013594439,0.025679804,0.010409224,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [5] | Right Index [6] // Basepair G708 - C721 cWW HairpinNode | Num Bases [1] | Left Index [6] | Right Index [6] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_87507.1:
> IL_87507.1 IL_4A1B_029 G 704 C 725 GAUAG*CGUCC > IL_87507.1 IL_3V2F_026 C 846 G 931 CUGAC*GGUG