| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 7 2 | 5 7 I | 6 8 | 7 7 I | 8 7 3 | 9 6 I | 10 5 4 | 11 4 I | 12 3 5 | 13 2 I | 14 2 6 | 15 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_58586.2_Instance_1 IL_58586.2_IL_1NTB_004_C18_G110 | C | U | A | C | C | A | C | G | ||||||||||||
| IL_58586.2_Sequence_1 IL_58586.2_IL_1NTB_004_C18_G110 | C | U | * | A | C | C | A | C | G | true | 80 | 0 | 0 | 1.93 | ||||||
| IL_58586.2_Instance_2 IL_58586.2_IL_3U5H_088_G1947_C2101 | G | G | C | A | A | C | ||||||||||||||
| IL_58586.2_Sequence_2 IL_58586.2_IL_3U5H_088_G_1947_C_2101 | G | G | * | C | A | A | C | true | 98 | 0 | 0 | 0.18 | ||||||||
| IL_58586.2_Instance_3 IL_58586.2_IL_3V2F_051_U1415_A1587 | U | G | C | A | C | A | A | |||||||||||||
| IL_58586.2_Sequence_3 IL_58586.2_IL_3V2F_051_U_1415_A_1587 | U | G | * | C | A | C | A | A | true | 100 | 0 | 0 | 0.00 |
1 6 cWW 2 3 cWW 2 4 s55 3 4 s35 5 6 s35JAR3D SCFG/MRF model for IL_58586.2:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node C18 - G110 from junction BasepairNode | Deletion Probability [0.0000038011627649] | Pair Probability [[0.009685694,0.019182219,0.010986155,0.195803621,0.000000000],[0.020623118,0.008749922,0.213456437,0.012400460,0.000000000],[0.010991697,0.213086471,0.002130191,0.024759915,0.000000000],[0.208179451,0.012376361,0.026149698,0.011438589,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.993970181,0.005999820,0.000029999] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.657073038,0.336682053,0.005973391,0.000271518] | Right Letter Distribution [0.166666667,0.500000000,0.166666667,0.166666667,0.000000000] | Left Index [1] | Right Index [6] // Basepair C18 - G110 cWW FixedNode | Deletion Probability [0.0050000000000000] | Letter Distribution [0.700000000,0.100000000,0.100000000,0.100000000,0.000000000] | Position [2] | Left Index [2] | Right Index [5] // Fixed node on right InitialNode | Left Length Distribution [1.000000000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.334863624,0.653524170,0.011072104,0.000540103] | Right Letter Distribution [0.125000000,0.625000000,0.125000000,0.125000000,0.000000000] | Left Index [2] | Right Index [4] // New Initial node after Fixed node FixedNode | Deletion Probability [0.0050000000000000] | Letter Distribution [0.500000000,0.300000000,0.100000000,0.100000000,0.000000000] | Position [2] | Left Index [2] | Right Index [4] // Fixed node on right InitialNode | Left Length Distribution [1.000000000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.993970181,0.005999820,0.000029999] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // New Initial node after Fixed node BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009739925,0.020358673,0.011034426,0.196159567,0.000000000],[0.019444127,0.008696821,0.201565110,0.012181893,0.000000000],[0.010941858,0.224949521,0.002130047,0.026008753,0.000000000],[0.207797734,0.012593113,0.024897429,0.011501002,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair U19 - A105 cWW HairpinNode | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_58586.2:
> IL_58586.2 IL_1NTB_004 C 18 G 110 CU*ACCACG > IL_58586.2 IL_3U5H_088 G 1947 C 2101 GG*CAAC > IL_58586.2 IL_3V2F_051 U 1415 A 1587 UG*CACAA