| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 4 | 7 3 I | 8 3 3 | 9 2 I | 10 2 4 | 11 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_47875.1_Instance_1 IL_47875.1_IL_2AW7_029_C569_G881 | C | GUAAA | G | C | G | |||||||||||
| IL_47875.1_Sequence_1 IL_47875.1_IL_2AW7_029_C569_G881 | C | GUAAA | G | * | C | G | true | 71 | 0 | 0 | 2.74 | |||||
| IL_47875.1_Instance_2 IL_47875.1_IL_1FJG_022_C569_G881 | C | GUAAA | G | C | G | |||||||||||
| IL_47875.1_Sequence_2 IL_47875.1_IL_1FJG_022_C569_G881 | C | GUAAA | G | * | C | G | true | 71 | 0 | 0 | 2.74 | |||||
| IL_47875.1_Instance_3 IL_47875.1_IL_3U5F_086_U1656_A1744 | U | U | G | U | A | |||||||||||
| IL_47875.1_Sequence_3 IL_47875.1_IL_3U5F_086_U_1656_A_1744 | U | U | G | * | U | A | true | 100 | 0 | 0 | 0.00 |
1 4 cWW 2 3 cWW 2 4 s55 3 4 s35JAR3D SCFG/MRF model for IL_47875.1:
Character Definition | A,C,G,U,* // Define characters here InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node C569 - G881 from junction BasepairNode | Deletion Probability [0.0000000000000877] | Pair Probability [[0.009631464,0.018005765,0.010937883,0.195447676,0.000000000],[0.021802108,0.008803023,0.225347764,0.012619028,0.000000000],[0.011041535,0.201223421,0.002130335,0.023511078,0.000000000],[0.208561169,0.012159610,0.027401966,0.011376175,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.005372012,0.322320709,0.005372012,0.000268601,0.010744024,0.644641418,0.010744024,0.000537201] | Left Letter Distribution [0.500000000,0.038461538,0.192307692,0.269230769,0.000000000] | Right Length Distribution [0.993970181,0.005999820,0.000029999] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Basepair C569 - G881 cWW BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.012177484,0.116137280,0.012933173,0.142477129,0.000000000],[0.016134877,0.009362462,0.150186535,0.013850494,0.000000000],[0.012721318,0.175949556,0.002559131,0.141914947,0.000000000],[0.139511388,0.014835325,0.020706313,0.018542585,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair G575 - C880 cWW HairpinNode | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_47875.1:
> IL_47875.1 IL_2AW7_029 C 569 G 881 CGUAAAG*CG > IL_47875.1 IL_1FJG_022 C 569 G 881 CGUAAAG*CG > IL_47875.1 IL_3U5F_086 U 1656 A 1744 UUG*UA