Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node G82 - C69 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.007469190,0.035454171,0.008848563,0.055108842,0.000000000],[0.135299260,0.018541243,0.060822847,0.009937285,0.000000000],[0.008965028,0.365385918,0.001900604,0.011999087,0.000000000],[0.057751514,0.026200513,0.188225765,0.008090169,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair G82 - C69 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.031367251,0.013715955,0.156150857,0.014879404,0.000000000],[0.012363135,0.006744102,0.019055853,0.256312561,0.000000000],[0.035633151,0.020003102,0.032649911,0.015287890,0.000000000],[0.014774915,0.345521165,0.013799204,0.011741543,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair A83 - G68 cWW 
BasepairNode | Deletion Probability [0.0000000665942263] | Pair Probability [[0.045076221,0.012605543,0.036331824,0.133311299,0.000000000],[0.013984889,0.008297207,0.020395310,0.351576389,0.000000000],[0.038647371,0.019429488,0.003148791,0.014069770,0.000000000],[0.015171150,0.261338176,0.015587646,0.011028925,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.440515158,0.005506439,0.550766313,0.003059133,0.000152957] | Right Letter Distribution [0.041666667,0.875000000,0.041666667,0.041666667,0.000000000] | Left Index [3] | Right Index [6] // Basepair A84 - U67 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.011671890,0.141753274,0.011575960,0.176125399,0.000000000],[0.016460837,0.009640055,0.115829431,0.011760984,0.000000000],[0.011423945,0.118941193,0.002553126,0.194780112,0.000000000],[0.123257240,0.012491177,0.018568110,0.023167266,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [5] // Basepair A85 - U64 cWW 
HairpinNode  | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
