Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node G775 - C791 from junction 
BasepairNode | Deletion Probability [0.0000000000000155] | Pair Probability [[0.009810372,0.019985697,0.011358953,0.186173951,0.000000000],[0.016552873,0.008089349,0.200518679,0.012762933,0.000000000],[0.011215968,0.263443051,0.002068393,0.026530626,0.000000000],[0.185098881,0.013397366,0.022885515,0.010107394,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.008193363,0.983203605,0.008193363,0.000409668] | Left Letter Distribution [0.062500000,0.062500000,0.812500000,0.062500000,0.000000000] | Right Length Distribution [0.000000000,0.000000000,0.008193363,0.983203605,0.008193363,0.000409668] | Right Letter Distribution [0.575000000,0.175000000,0.025000000,0.225000000,0.000000000] | Left Index [1] | Right Index [4] // Basepair G775 - C791 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.011529978,0.114026310,0.011927368,0.164155828,0.000000000],[0.016602246,0.009385099,0.140755504,0.012500592,0.000000000],[0.011763808,0.164040638,0.002486250,0.147401099,0.000000000],[0.140179758,0.013269385,0.020057334,0.019918804,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair G777 - C787 cWW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
