Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node A1260 - U1212 from junction 
BasepairNode | Deletion Probability [0.0000021781539185] | Pair Probability [[0.008689929,0.020160253,0.009504388,0.235118271,0.000000000],[0.019137928,0.008395256,0.190661991,0.010272581,0.000000000],[0.009489195,0.200405405,0.001975739,0.024126020,0.000000000],[0.215665956,0.010339743,0.023110977,0.012946368,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.543801687,0.453920502,0.002175207,0.000102604] | Left Letter Distribution [0.214285714,0.071428571,0.642857143,0.071428571,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair A1260 - U1212 cWW 
BasepairNode | Deletion Probability [0.0000055822185641] | Pair Probability [[0.015307233,0.014152753,0.062571942,0.012015483,0.000000000],[0.014890737,0.034347499,0.320439627,0.014761469,0.000000000],[0.034150702,0.012767370,0.017416671,0.009480468,0.000000000],[0.017109969,0.013608308,0.374787559,0.032192212,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.904400732,0.004522004,0.090645619,0.000411091,0.000020555] | Left Letter Distribution [0.375000000,0.125000000,0.375000000,0.125000000,0.000000000] | Right Length Distribution [0.904811823,0.094550986,0.000616637,0.000020555] | Right Letter Distribution [0.166666667,0.166666667,0.500000000,0.166666667,0.000000000] | Left Index [2] | Right Index [5] // Basepair U1262 - G1211 cSW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009079395,0.018751861,0.010311537,0.200254787,0.000000000],[0.017793342,0.008009199,0.216258756,0.011613886,0.000000000],[0.010285326,0.235466898,0.001975452,0.024095549,0.000000000],[0.190387789,0.011730064,0.023113053,0.010873107,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair G1263 - C1210 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
