Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [10] // Initial node C990 - G1014 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.010090714,0.014463119,0.011862728,0.111472694,0.000000000],[0.148456487,0.010868877,0.173513261,0.013600691,0.000000000],[0.012073761,0.107968823,0.002496283,0.017487865,0.000000000],[0.105870687,0.012603264,0.235985582,0.011185164,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [10] // Basepair C990 - G1014 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.137769253,0.091987757,0.001095288,0.007668052,0.000000000],[0.146471273,0.106633920,0.001319392,0.001319392,0.000000000],[0.256993336,0.001930613,0.010231048,0.138556003,0.000000000],[0.049284353,0.047658021,0.000541150,0.000541150,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [9] // Basepair G991 - A1013 tSH 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.021617428,0.107604254,0.004245584,0.502765553,0.000000000],[0.004245584,0.033679913,0.004245584,0.004245584,0.000000000],[0.043285658,0.065999338,0.047545948,0.049058839,0.000000000],[0.004245584,0.004245584,0.022292533,0.080677030,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [8] // Basepair A992 - U1012 tHW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.031448730,0.031127007,0.294456641,0.032960893,0.000000000],[0.034877929,0.031675905,0.004217122,0.031579695,0.000000000],[0.000674008,0.000674008,0.297759431,0.000674008,0.000000000],[0.032388063,0.000674008,0.174138545,0.000674008,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [7] // Basepair A993 - G1011 tHS 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009977130,0.065408444,0.010976641,0.145413475,0.000000000],[0.015265187,0.007936705,0.182128792,0.012129373,0.000000000],[0.010862667,0.246003737,0.002105170,0.101876728,0.000000000],[0.143870840,0.012657470,0.020116733,0.013270908,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [5] | Right Index [6] // Basepair G994 - C1010 cWW 
HairpinNode  | Num Bases [1] | Left Index [6] | Right Index [6] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
