Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node C1489 - G1500 from junction 
BasepairNode | Deletion Probability [0.0000000111126777] | Pair Probability [[0.008987135,0.014737334,0.010442130,0.136123677,0.000000000],[0.084757914,0.008954844,0.219787357,0.011965985,0.000000000],[0.010562580,0.159202085,0.002111911,0.018568547,0.000000000],[0.146497848,0.011399971,0.145832717,0.010067968,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.001233920,0.543953276,0.453671428,0.001089963,0.000051413] | Left Letter Distribution [0.455882353,0.102941176,0.220588235,0.220588235,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Basepair C1489 - G1500 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009572099,0.072799459,0.010276225,0.169471956,0.000000000],[0.014437509,0.007768090,0.147879255,0.011072350,0.000000000],[0.010146088,0.242115188,0.002044737,0.124309147,0.000000000],[0.133710503,0.011675351,0.018360351,0.014361691,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair G1491 - C1499 cWW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
