Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node C2122 - G2272 from junction 
BasepairNode | Deletion Probability [0.0000000176048942] | Pair Probability [[0.009966159,0.015204404,0.011689454,0.138288258,0.000000000],[0.093322444,0.009751015,0.227094929,0.013683603,0.000000000],[0.011877006,0.149074025,0.002321010,0.019779227,0.000000000],[0.140763174,0.012816665,0.133876049,0.010492577,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.904811823,0.094550986,0.000616637,0.000020555] | Left Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000] | Right Length Distribution [0.092564150,0.542688047,0.362904712,0.001761176,0.000081915] | Right Letter Distribution [0.343750000,0.031250000,0.406250000,0.218750000,0.000000000] | Left Index [1] | Right Index [6] // Basepair C2122 - G2272 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.102828044,0.103742905,0.222993778,0.111770444,0.000000000],[0.119859249,0.108737694,0.001238947,0.107676566,0.000000000],[0.001238947,0.001238947,0.006002437,0.001238947,0.000000000],[0.005899707,0.001238947,0.103055496,0.001238947,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair A2123 - G2270 tHS 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.010765928,0.091598712,0.011446582,0.152351597,0.000000000],[0.016272570,0.008695101,0.155838320,0.012296204,0.000000000],[0.011310571,0.195594189,0.002302334,0.131380470,0.000000000],[0.150288428,0.012933719,0.020335074,0.016590203,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair G2124 - C2269 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
