Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node G362 - C290 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.006957785,0.031044682,0.007726000,0.166929207,0.000000000],[0.012665965,0.005940363,0.237074222,0.008622507,0.000000000],[0.007698997,0.257196629,0.001503910,0.069207395,0.000000000],[0.153290803,0.008750611,0.016247783,0.009143139,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair G362 - C290 cWW 
BasepairNode | Deletion Probability [0.0000137278371017] | Pair Probability [[0.034754732,0.130982684,0.116844038,0.026075053,0.000000000],[0.049738314,0.024189615,0.022507864,0.068746157,0.000000000],[0.070256634,0.029528564,0.002488241,0.046827864,0.000000000],[0.045332517,0.078248470,0.020461623,0.233017631,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.925031731,0.074853505,0.000111338,0.000003426] | Left Letter Distribution [0.250000000,0.083333333,0.083333333,0.583333333,0.000000000] | Right Length Distribution [0.962028959,0.037890532,0.000078796,0.000001713] | Right Letter Distribution [0.125000000,0.125000000,0.625000000,0.125000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair A363 - G289 cWW 
BasepairNode | Deletion Probability [0.0000112217093753] | Pair Probability [[0.034499020,0.052942702,0.116617256,0.018280503,0.000000000],[0.114946246,0.008964170,0.016808599,0.095584687,0.000000000],[0.070111370,0.016038497,0.033987346,0.021253993,0.000000000],[0.018036964,0.080552333,0.094262581,0.207113735,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.869523514,0.111812030,0.018641333,0.000022266,0.000000856] | Left Letter Distribution [0.650000000,0.050000000,0.050000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // Basepair C364 - A288 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.006917479,0.027832696,0.007686497,0.192071859,0.000000000],[0.019887914,0.006119788,0.188345103,0.008495618,0.000000000],[0.007655131,0.267461875,0.001521626,0.058854920,0.000000000],[0.152192675,0.008637940,0.037076584,0.009242294,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [5] // Basepair G365 - C287 cWW 
HairpinNode  | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
