Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node C514 - G510 from junction 
BasepairNode | Deletion Probability [0.0000200549857569] | Pair Probability [[0.003291574,0.011529293,0.003686951,0.197762924,0.000000000],[0.007881038,0.002880380,0.287825472,0.004134905,0.000000000],[0.003681300,0.300526949,0.000718227,0.051483778,0.000000000],[0.093842243,0.004161476,0.022365956,0.004227533,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.963239713,0.036740537,0.000019334,0.000000417] | Left Letter Distribution [0.550000000,0.050000000,0.150000000,0.250000000,0.000000000] | Right Length Distribution [0.995195221,0.004792324,0.000012403,0.000000052] | Right Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair C514 - G510 cWW 
BasepairNode | Deletion Probability [0.0000109530288226] | Pair Probability [[0.052666972,0.072421078,0.058532060,0.009531134,0.000000000],[0.086989926,0.034334704,0.007619827,0.040768375,0.000000000],[0.106508400,0.007591032,0.011217571,0.015780304,0.000000000],[0.018613635,0.073491815,0.023265910,0.380667257,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.903889795,0.073251827,0.022852073,0.000006045,0.000000261] | Left Letter Distribution [0.553571429,0.089285714,0.267857143,0.089285714,0.000000000] | Right Length Distribution [0.976931747,0.009356354,0.013708512,0.000003231,0.000000156] | Right Letter Distribution [0.050000000,0.350000000,0.350000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair U515 - U509 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.003348523,0.013097713,0.003754968,0.102234011,0.000000000],[0.007846621,0.002881783,0.255776524,0.004205498,0.000000000],[0.003741678,0.365916126,0.000725993,0.065838903,0.000000000],[0.139819073,0.004266856,0.022358075,0.004187656,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair G516 - C508 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
