Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [12] // Initial node U45 - G64 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.010861630,0.015518619,0.012759211,0.101819593,0.000000000],[0.173445935,0.011997144,0.128406679,0.014433747,0.000000000],[0.012959429,0.115200367,0.002728704,0.018324658,0.000000000],[0.115535013,0.013473421,0.240394114,0.012141736,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [12] // Basepair U45 - G64 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.050489329,0.042183614,0.000520707,0.027051559,0.000000000],[0.419540607,0.255029502,0.027381659,0.003644947,0.000000000],[0.043601253,0.000520707,0.027349873,0.006066193,0.000000000],[0.048627321,0.046951315,0.000520707,0.000520707,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [11] // Basepair C46 - A63 tSH 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.017695077,0.279180118,0.002241342,0.045999899,0.000000000],[0.002241342,0.010605986,0.025978054,0.002241342,0.000000000],[0.149311367,0.207805235,0.015309849,0.010728810,0.000000000],[0.002241342,0.002241342,0.023148360,0.203030532,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [10] // Basepair A47 - C62 tHW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.008241149,0.006583009,0.079647297,0.005438157,0.000000000],[0.004483626,0.004166170,0.030377634,0.004738347,0.000000000],[0.000948703,0.000948703,0.719138102,0.000948703,0.000000000],[0.088506880,0.000948703,0.043936112,0.000948703,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [9] // Basepair G48 - G61 tHS 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.095476982,0.063682634,0.259729097,0.017796169,0.000000000],[0.012936191,0.005797560,0.018701505,0.032815706,0.000000000],[0.307844781,0.019297171,0.025207837,0.051425081,0.000000000],[0.016902877,0.034170536,0.014254373,0.023961499,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [5] | Right Index [8] // Basepair G49 - A60 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009252775,0.018190197,0.010372744,0.181878762,0.000000000],[0.051344320,0.009257883,0.190042721,0.011475298,0.000000000],[0.010430036,0.179189206,0.002156526,0.022148569,0.000000000],[0.212757301,0.011207133,0.068104341,0.012192189,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [6] | Right Index [7] // Basepair U50 - A59 cWW 
HairpinNode  | Num Bases [1] | Left Index [7] | Right Index [7] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
