Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node C569 - G881 from junction 
BasepairNode | Deletion Probability [0.0000000000000877] | Pair Probability [[0.009631464,0.018005765,0.010937883,0.195447676,0.000000000],[0.021802108,0.008803023,0.225347764,0.012619028,0.000000000],[0.011041535,0.201223421,0.002130335,0.023511078,0.000000000],[0.208561169,0.012159610,0.027401966,0.011376175,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.005372012,0.322320709,0.005372012,0.000268601,0.010744024,0.644641418,0.010744024,0.000537201] | Left Letter Distribution [0.500000000,0.038461538,0.192307692,0.269230769,0.000000000] | Right Length Distribution [0.993970181,0.005999820,0.000029999] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Basepair C569 - G881 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.012177484,0.116137280,0.012933173,0.142477129,0.000000000],[0.016134877,0.009362462,0.150186535,0.013850494,0.000000000],[0.012721318,0.175949556,0.002559131,0.141914947,0.000000000],[0.139511388,0.014835325,0.020706313,0.018542585,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair G575 - C880 cWW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
