Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [12] // Initial node A673 - U717 from junction 
BasepairNode | Deletion Probability [0.0000234451146992] | Pair Probability [[0.009784429,0.021777989,0.011031390,0.208347691,0.000000000],[0.017985926,0.008620950,0.201027673,0.012148861,0.000000000],[0.010927772,0.225150163,0.002128171,0.027374013,0.000000000],[0.195241385,0.012608128,0.023487298,0.012358162,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.993970181,0.005999820,0.000029999] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.993970181,0.005999820,0.000029999] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [12] // Basepair A673 - U717 cWW 
BasepairNode | Deletion Probability [0.0000006376409404] | Pair Probability [[0.045115996,0.013962508,0.338697479,0.016071795,0.000000000],[0.014298241,0.005731928,0.019359879,0.043268658,0.000000000],[0.381657250,0.019116179,0.003525310,0.015542429,0.000000000],[0.016099227,0.040676227,0.015894192,0.010982702,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.651642683,0.016291067,0.326364377,0.005430356,0.000271518] | Left Letter Distribution [0.375000000,0.125000000,0.375000000,0.125000000,0.000000000] | Right Length Distribution [0.993970181,0.005999820,0.000029999] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [11] // Basepair G674 - A716 cWW 
BasepairNode | Deletion Probability [0.0000234451146992] | Pair Probability [[0.417333101,0.017239390,0.259255002,0.017136446,0.000000000],[0.013083937,0.003979156,0.018565226,0.019605876,0.000000000],[0.050924196,0.018873109,0.003979156,0.019011132,0.000000000],[0.072782957,0.040416298,0.014682399,0.013132619,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.993970181,0.005999820,0.000029999] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.993970181,0.005999820,0.000029999] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [10] // Basepair A675 - A715 cWW 
BasepairNode | Deletion Probability [0.0000234451146992] | Pair Probability [[0.183826124,0.011443433,0.301561645,0.012884831,0.000000000],[0.067115556,0.004309900,0.015299415,0.032554752,0.000000000],[0.271072640,0.015494457,0.002821442,0.012720734,0.000000000],[0.012862876,0.034629574,0.012439205,0.008963416,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.993970181,0.005999820,0.000029999] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.993970181,0.005999820,0.000029999] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [9] // Basepair A676 - G714 cWW 
BasepairNode | Deletion Probability [0.0000234451146992] | Pair Probability [[0.073047508,0.015684070,0.041196808,0.013291818,0.000000000],[0.016590084,0.014569073,0.321651087,0.016400656,0.000000000],[0.014443454,0.014128846,0.018083854,0.010409951,0.000000000],[0.018093766,0.015069156,0.385176707,0.012163162,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.993970181,0.005999820,0.000029999] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.993970181,0.005999820,0.000029999] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [5] | Right Index [8] // Basepair U677 - G713 cSW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009329508,0.018973088,0.010330785,0.200366695,0.000000000],[0.023032249,0.009121783,0.208662517,0.011447685,0.000000000],[0.010390909,0.196046055,0.002131601,0.023465306,0.000000000],[0.225487075,0.011181893,0.027495044,0.012537807,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [6] | Right Index [7] // Basepair U678 - A712 cWW 
HairpinNode  | Num Bases [1] | Left Index [7] | Right Index [7] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
