Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node U10 - A9 from junction 
BasepairNode | Deletion Probability [0.0000022743263860] | Pair Probability [[0.007822282,0.015211771,0.008835548,0.188466571,0.000000000],[0.033000285,0.007458781,0.254016983,0.009993188,0.000000000],[0.008900242,0.166374685,0.001775563,0.019081185,0.000000000],[0.205125114,0.009698657,0.054346970,0.009892175,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.791507109,0.070240175,0.034773039,0.103289839,0.000180940,0.000008899] | Right Letter Distribution [0.100000000,0.166666667,0.300000000,0.433333333,0.000000000] | Left Index [1] | Right Index [6] // Basepair U10 - A9 cWW 
BasepairNode | Deletion Probability [0.0000118002824533] | Pair Probability [[0.035467769,0.023839862,0.144309590,0.003917147,0.000000000],[0.000584048,0.012153125,0.230639564,0.005843907,0.000000000],[0.012326241,0.000584048,0.448316792,0.012211955,0.000000000],[0.002449461,0.023839862,0.013330949,0.030185680,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.894950292,0.104785667,0.000255141,0.000008900] | Left Letter Distribution [0.100000000,0.100000000,0.700000000,0.100000000,0.000000000] | Right Length Distribution [0.963774631,0.036079981,0.000142421,0.000002967] | Right Letter Distribution [0.500000000,0.166666667,0.166666667,0.166666667,0.000000000] | Left Index [2] | Right Index [5] // Basepair G11 - G8 cWH 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.008000198,0.032420260,0.008759319,0.213649271,0.000000000],[0.015762103,0.007220259,0.189250168,0.009572296,0.000000000],[0.008727472,0.213435371,0.001771176,0.053523146,0.000000000],[0.197250027,0.009720924,0.019476146,0.011461864,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair A12 - U7 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
