Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node A1895 - U2340 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.009295351,0.020785081,0.010277952,0.217760832,0.000000000],[0.019941766,0.008764932,0.204139468,0.011291914,0.000000000],[0.010274719,0.204355555,0.002088457,0.025369463,0.000000000],[0.206675622,0.011305972,0.024556092,0.013116825,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair A1895 - U2340 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.032853642,0.397518223,0.003498992,0.039114777,0.000000000],[0.016637424,0.016275544,0.010646670,0.016012148,0.000000000],[0.003498992,0.013571742,0.038322192,0.323133304,0.000000000],[0.016476222,0.015549427,0.015692946,0.041197755,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair A1896 - C2339 tWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009536910,0.021600597,0.010692095,0.215284636,0.000000000],[0.017829900,0.008514812,0.196152613,0.011724048,0.000000000],[0.010598992,0.228986356,0.002087543,0.026866464,0.000000000],[0.192454657,0.012136575,0.023027210,0.012506591,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair G1897 - C2338 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
