Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [10] // Initial node G1856 - C1886 from junction 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.008122691,0.014661627,0.009375677,0.148321841,0.000000000],[0.052633032,0.007677310,0.217856305,0.010653760,0.000000000],[0.009416586,0.224845442,0.001847153,0.018715187,0.000000000],[0.156997400,0.010454861,0.099256991,0.009164136,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [10] // Basepair G1856 - C1886 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.090319003,0.093678642,0.012073407,0.017424652,0.000000000],[0.093928424,0.159982766,0.001106375,0.001106375,0.000000000],[0.249506271,0.001106375,0.026084151,0.077828330,0.000000000],[0.088479441,0.085163037,0.001106375,0.001106375,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [9] // Basepair G1857 - A1885 tSH 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.172658120,0.091625881,0.001252191,0.028779862,0.000000000],[0.092017248,0.068763516,0.001252191,0.001252191,0.000000000],[0.244092294,0.001252191,0.046055822,0.054742799,0.000000000],[0.103973853,0.089777455,0.001252191,0.001252191,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [8] // Basepair G1858 - A1884 tSH 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.114226799,0.091684732,0.250077615,0.138459354,0.000000000],[0.114669271,0.086616634,0.001065282,0.117277227,0.000000000],[0.001065282,0.001065282,0.005710459,0.001065282,0.000000000],[0.005519222,0.001065282,0.069366997,0.001065282,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [7] // Basepair A1859 - G1883 tHS 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009071527,0.074411793,0.009690705,0.145893352,0.000000000],[0.013609116,0.007309360,0.141711403,0.010426233,0.000000000],[0.009568793,0.252142141,0.001935840,0.146021452,0.000000000],[0.136309275,0.010994406,0.017166296,0.013738307,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [5] | Right Index [6] // Basepair G1860 - C1882 cWW 
HairpinNode  | Num Bases [1] | Left Index [6] | Right Index [6] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
