Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node C1132 - G1045 from junction 
BasepairNode | Deletion Probability [0.0000000207694325] | Pair Probability [[0.010059085,0.016709368,0.011765394,0.148424081,0.000000000],[0.079921576,0.009525552,0.200524308,0.013560844,0.000000000],[0.011854065,0.189373536,0.002298327,0.021714464,0.000000000],[0.149974270,0.013138568,0.110603748,0.010552815,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.222432705,0.441810016,0.113721776,0.220721684,0.001252712,0.000061108] | Right Letter Distribution [0.392857143,0.107142857,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair C1132 - G1045 cWW 
BasepairNode | Deletion Probability [0.0000073600808576] | Pair Probability [[0.026386433,0.120956510,0.119329082,0.026512032,0.000000000],[0.015806411,0.012345035,0.021065763,0.054224136,0.000000000],[0.150766680,0.021860238,0.003890100,0.058563719,0.000000000],[0.023298207,0.069910175,0.016516457,0.258569024,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.883191757,0.005519948,0.110644301,0.000613328,0.000030666] | Right Letter Distribution [0.375000000,0.125000000,0.125000000,0.375000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair G1133 - A1043 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009833110,0.049199864,0.010754983,0.199307317,0.000000000],[0.018197807,0.008540104,0.211715629,0.011980972,0.000000000],[0.010760300,0.183124357,0.002146804,0.066510832,0.000000000],[0.168917576,0.011971032,0.022875826,0.014163487,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair C1134 - G1042 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
