Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node C2547 - G2609 from junction 
BasepairNode | Deletion Probability [0.0000000004335789] | Pair Probability [[0.008791164,0.017088285,0.010056729,0.182749433,0.000000000],[0.017769220,0.007709097,0.245759773,0.011520229,0.000000000],[0.010075308,0.227524758,0.001907120,0.022437230,0.000000000],[0.192056308,0.011437882,0.023135090,0.009982373,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.001324284,0.398609502,0.398830216,0.067604701,0.000728356,0.132439442,0.000441428,0.000022071] | Right Letter Distribution [0.409090909,0.257575758,0.045454545,0.287878788,0.000000000] | Left Index [1] | Right Index [4] // Basepair C2547 - G2609 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.008884572,0.016486355,0.010152446,0.174353499,0.000000000],[0.036137873,0.008237886,0.244341815,0.011637174,0.000000000],[0.010227979,0.189336687,0.001988916,0.021267196,0.000000000],[0.193505768,0.011294003,0.051751617,0.010396213,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair C2548 - G2606 cWW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
