Character Definition | A,C,G,U,* // Define characters here
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node U552 - A32 from junction 
BasepairNode | Deletion Probability [0.0000000585427973] | Pair Probability [[0.002984895,0.008502719,0.003364341,0.157939991,0.000000000],[0.010068077,0.002704908,0.306529810,0.003785869,0.000000000],[0.003369242,0.254635040,0.000662077,0.033356281,0.000000000],[0.157998663,0.003763442,0.046593663,0.003740983,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.000175526,0.870631480,0.117065137,0.012124119,0.000003616,0.000000122] | Right Letter Distribution [0.401754386,0.135087719,0.117543860,0.345614035,0.000000000] | Left Index [1] | Right Index [4] // Basepair U552 - A32 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.003130809,0.014497660,0.003476671,0.128679198,0.000000000],[0.009686799,0.002747477,0.398514213,0.003915327,0.000000000],[0.003485240,0.159470041,0.000688178,0.091747219,0.000000000],[0.128671733,0.003879674,0.043254526,0.004155235,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair A553 - U30 cWW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
