This page is newly constructed in September 2024.
It works reasonably well, but has not been extensively tested yet.
If you find a problem, please send an email to Craig Zirbel at zirbel@bgsu.edu.
Copy the URL of the result if one is produced, that will help to diagnose the problem.
| 1. |
Describe the motif you are looking for, using (a), (b), or both. |
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a. For a purely symbolic search, specify the number of positions in the motif
and then add symbolic constraints below.
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b. If you have a set of nucleotides that form the motif, and you want to search for other instances
according to the geometry of the motif, fill in their
unit IDs, separated by commas:
and set the maximum geometric discrepancy from the query nucleotides:
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| 2. |
To add symbolic constraints, click the button below
and then fill in interactions like cWW or stack in the yellow boxes, and chain
continuity constraints in the blue boxes.
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| 3. |
What structures from the Protein Data Bank should be searched? Use (a), (b), or both. |
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a. List individual structures (like 6ZMI) or chains (like 6ZMI|1|L5), separated by commas:
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b. Specify an
or
by typing the release number
and the resolution cutoff
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| 4. |
Give your search a description (0 to 150 characters):
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| 5. |
When you are ready to launch the search, click the Search button:
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Clear the entire form to start again
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