JAR3D
Query RF02997-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
There are no chains in PDB that we map to Rfam family RF02997.
Loop 8 Internal loop
Column numbers: 89-91, 122-123
Scored sequences and counts
Omitted sequenced and counts
--U*A- 5
U--*-U 3
A--*-U 2
AU-*-A 1
UU-*-A 1
---*-- 1
No Matches Found
View All Results for this Loop
Percentage of input sequences which meet the criteria to match the motif. 80% or above is good.
A score indicating how close a sequence is to the cutoff barrier. 100 is the best, 0 is right on the cutoff line, negative is outside of the cutoff region.
The median of the minimum edit distance between each input sequence and sequences of each motif from 3D structures.
The median of the minimum edit distance between each input sequence and sequences of each motif from 3D structures, aside from the flanking basepairs.
A diagram of the consensus basepair interactions in the motif group, with Leontis-Westhof symbols.