HL_1VBX_001

3D structure

PDB id

1VBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUCCUCGCUG

Length

10 nucleotides

Bulged bases

1VBX|1|B|U|123, 1VBX|1|B|C|126, 1VBX|1|B|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VBX_001 not in the Motif Atlas

Geometric match to HL_4PRF_001

Geometric discrepancy: 0.257

The information below is about HL_4PRF_001

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_37671.1

Basepair signature

cWW-tWW-F-F-F

Number of instances in this motif group

3

Unit IDs

1VBX|1|B|C|119
1VBX|1|B|U|120
1VBX|1|B|C|121
1VBX|1|B|C|122
1VBX|1|B|U|123
1VBX|1|B|C|124
1VBX|1|B|G|125
1VBX|1|B|C|126
1VBX|1|B|U|127
1VBX|1|B|G|128

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains