HL_7PIA_049

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GGUAAAUUC

Length

9 nucleotides

Bulged bases

7PIA|1|3|U|1962

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PIA_049 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.344

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7PIA|1|3|G|1956
7PIA|1|3|G|1957
7PIA|1|3|U|1958
7PIA|1|3|A|1959
7PIA|1|3|A|1960
7PIA|1|3|A|1961
7PIA|1|3|U|1962
7PIA|1|3|U|1963
7PIA|1|3|C|1964

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA

Chain j

50S ribosomal protein L14