IL_6RM3_056

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAU*AGUUU

Length

8 nucleotides

Bulged bases

6RM3|1|L50|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_056 not in the Motif Atlas

Homologous match to IL_8C3A_108

Geometric discrepancy: 0.2658

The information below is about IL_8C3A_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6RM3|1|L50|A|1941
6RM3|1|L50|A|1942
6RM3|1|L50|U|1943
*
6RM3|1|L50|A|1961
6RM3|1|L50|G|1962
6RM3|1|L50|U|1963
6RM3|1|L50|U|1964
6RM3|1|L50|U|1965

Current chains

Chain L50

23S rRNA

Nearby chains

Chain L70

5S ribosomal RNA; 5S rRNA

Chain LD0

uL18

Chain LJ0

uL5