IL_7PIA_049

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GAAG*CAUGC

Length

9 nucleotides

Bulged bases

7PIA|1|3|U|1593

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIA_049 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.481

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7PIA|1|3|G|1460
7PIA|1|3|A|1461
7PIA|1|3|A|1462
7PIA|1|3|G|1463
*
7PIA|1|3|C|1591
7PIA|1|3|A|1592
7PIA|1|3|U|1593
7PIA|1|3|G|1594
7PIA|1|3|C|1595

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2